Job Description P20936 Confidence 100.00% Date Fri May 25 10:08:08 BST 2012 Rank 1 Aligned Residues 352 % Identity 25% Template c3bxjB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:ras gtpase-activating protein syngap; PDBTitle: crystal structure of the c2-gap fragment of syngap Resolution 3.00 Å

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		683	.	.	.	.	.	.	690	.		.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.		.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure											.																																																								.
Query SS confidence											.																																																								.
Query Sequence		G	H	A	T	D	E	W	F	L	.	L	S	S	H	I	P	L	K	G	I	E	P	G	S	L	R	V	R	A	R	Y	S	M	E	K	I	M	P	E	E	E	Y	S	E	F	K	E	L	I	L	Q	K	E	L	H	V	V	Y	A	L	S	H	V	C	G	.	Q	D	R	T	L	L	A	S	I	L	L	R	I	F
Query Conservation											.																																																								.
Alig confidence											.																																																								.
Template Conservation
Template Sequence		N	K	D	N	S	R	R	V	D	N	V	L	G	E	H	F	E	F	N	N	H	F	T	E	Q	R	L	K	A	R	Y	Q	T	M	S	I	L	P	M	E	L	Y	K	E	F	A	E	Y	V	T	N	H	Y	R	M	L	C	A	V	L	E	P	A	L	N	V	K	G	K	E	E	V	A	S	A	L	V	H	I	L
Template Known Secondary structure																																																														T	T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		761	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780		.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		L	H	E	K	L	E	S	L	L	L	C	T	L	N	D	R	E	I	S	M	.	E	D	E	A	T	T	L	F	R	A	T	T	L	A	S	T	L	M	E	Q	Y	M	K	A	T	A	T	Q	F	V	H	H	A	L	K	D	S	I	L	K	I	M	E	S	K	Q	S	C	E	L	S	P	S	K	L	E	K	N	E
Query Conservation																						.
Alig confidence																						.																																																								.
Template Conservation																																																																														.
Template Sequence		Q	S	T	G	K	A	K	D	F	L	S	D	M	A	M	S	E	V	D	R	F	M	E	R	E	H	L	I	F	R	E	N	T	L	A	T	K	A	I	E	E	Y	M	R	L	I	G	Q	K	Y	L	K	D	A	I	G	E	F	I	R	A	L	Y	E	S	E	E	N	C	E	V	D	P	I	K	C	.	T	A	S
Template Known Secondary structure				T	T		T	T					T										T	T		G	G	G	G	G		S	S	S																																S								G	G	G		.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.
		840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	N	T	N	L	T	H	L	L	N	I	L	S	E	L	V	E	K	I	F	M	A	S	E	I	L	P	P	T	L	R	Y	I	Y	G	C	L	Q	K	S	V	Q	H	K	W	P	T	N	T	T	M	R	T	R	V	V	S	G	F	V	F	L	R	L	I	C	P	A	I	L	N	P	R	M	F	N	I	I	S
Query Conservation
Alig confidence																																																			.	.
Template Conservation																																																			.	.
Template Sequence		S	L	A	E	H	Q	A	N	L	R	M	C	C	E	L	A	L	C	K	V	V	N	S	H	C	V	F	P	R	E	L	K	E	V	F	A	S	W	R	L	R	C	A	E	R	G	R	E	D	.	.	I	A	D	R	L	I	S	A	S	L	F	L	R	F	L	C	P	A	I	M	S	P	S	L	F	G	L	M	Q
Template Known Secondary structure																							T	T	T	T	S	S																	T	T	T				.	.											T	T	T	S	S	S						G	G	G	T	T	S		S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.			.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
		920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	P	S	P	I	A	A	R	T	L	I	L	V	A	K	S	V	Q	N	L	A	N	L	V	E	F	G	A	K	E	P	Y	M	E	G	V	N	P	F	I	K	S	N	K	H	R	M	I	M	F	L	D	E	L	G	N	V	P	E	L	P	D	T	T	E	H	S	R	T	D	L	S	R	D	L	A	A	L	H
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		E	Y	P	D	E	Q	T	S	R	T	L	T	L	I	A	K	V	I	Q	N	L	A	N	F	S	K	F	T	S	K	E	D	F	L	G	F	M	N	E	F	L	E	L	E	W	G	S	M	Q	Q	F	L	Y	E	I	S	N	L	D	T	L	T	N	S	S	.	E	G	Y	I	D	L	G	R	E	L	S	T	L	H
Template Known Secondary structure		S																						T	T					S	S	S	G	G	G	G	G	G							T											T	T	S		S		S	S				.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.		.	.	.	.	.	.	.	670	.	.	.	.	.	.
		1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	C	V	A	H	S	D	E	L	R	T	L	S	N	E	R	G	A	Q	Q	H	V	L	K	K	L	L	A	I	T	E	L	L	Q	Q	K	Q	N	Q	Y	T	K	T	N	D	V	R
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.
Template Sequence		A	L	L	W	E	V	L	P	Q	L	.	.	.	.	.	.	.	.	.	S	K	E	A	L	L	K	L	G	P	L	P	R	L	L	S	D	I	S	T	A	L	R	N	P	N	I	Q	R
Template Known Secondary structure								G	G	G	S	.	.	.	.	.	.	.	.	.								T	T	T														S	T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Template SS confidence
		679	680	.	.	.	.	.	.	.	.										.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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