Job Description P20936 Confidence 99.65% Date Fri May 25 10:08:08 BST 2012 Rank 119 Aligned Residues 162 % Identity 19% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	W	Y	H	G	K	L	D	R	T	I	A	E	E	R	L	R	Q	A	G	K	S	G	S	Y	L	I	R	E	S	D	R	R	P	G	S	F	V	L	S	F	L	S	Q	M	N	V	V	N	H	F	R	I	I	A	M	C	G	D	Y	Y	I	G	G	R	R	F	S	S	L	S	D	L	I	G	Y	Y	S	H
Query Conservation
Alig confidence							.														.	.											.																																															.	.
Template Conservation							.														.	.											.																																															.	.
Template Sequence		H	P	L	F	K	.	N	F	N	V	T	E	S	E	N	Y	L	R	S	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	.	.
Template Known Secondary structure		S	T	T			.														.	.	S	S									.	S	S	T	T										T	T											S	S					T	T				S	S								T	.	.
Template Predicted Secondary structure							.														.	.											.																																															.	.
Template SS confidence
		792	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.	.	.			810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	C	L	L	K	G	E	K	L	L	Y	P	V	A	P	P	E	P	V	E	D	R	R	R	V	R	A	I	L	P	Y	T	K	V	P	D	T	D	E	I	S	F	L	K	G	D	M	F	I	V	H	N	E	L	E	D	G	W	M	W	V	T	N	L	R	T	D	E	Q	G	L	I	V	E	D	L	V	E	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																																															866	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	G	R	E	E	D	P	H	E	G	K	I	W	F	H	G	K	I	S	K	Q	E	A	Y	N	L	L	M	T	V	G	Q	V	C	S	.	F	L	V	R	P	S	D	N	T	P	G	D	Y	S	L	Y	F	R	T	N	E	N	I	Q	R	F	K	I	C	P	T	P	N	N	Q	F	M	M	G	G	R	Y	Y	N
Query Conservation																																					.
Alig confidence																		.	.																		.																																	.	.	.
Template Conservation																		.	.																																																			.	.	.
Template Sequence		I	L	R	N	L	K	S	I	K	A	H	A	K	Y	F	N	.	.	S	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	.	.	.	L	T	Y	N	N	S	T	F	K
Template Known Secondary structure												S	T	T	B		S	.	.		T	T	T	S						T			S	S	S									S	S	S	T	T								S	S	S									S	S	S	.	.	.				T	T				S
Template Predicted Secondary structure																		.	.																																																			.	.	.
Template SS confidence
		869	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.			.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.				.	.	.	.	.	940	.	.	.
		418	.	420	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	G	D	I	I	D	H	Y	R	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		944	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions