Job Description A1L020 Confidence 46.43% Date Tue Apr 3 15:04:20 BST 2012 Rank 172 Aligned Residues 43 % Identity 19% Template c3jxoB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:trka-n domain protein; PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima Resolution 1.55 Å

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		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.					.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		G	A	T	I	K	R	I	Q	Q	Q	T	N	T	Y	I	.	.	.	.	.	.	.	.	.	I	T	P	S	R	D	R	.	.	.	.	D	P	V	F	E	I	T	G	A	P	G	N	V	E	R	A	R	E	E	I	E
Query Conservation																	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		G	K	K	L	K	D	L	P	L	P	R	D	S	I	I	A	A	I	V	R	G	G	V	L	V	V	P	R	G	D	T	E	I	L	S	G	D	K	L	Y	V	I	V	S	A	E	A	K	E	T	V	E	E	T	L	L
Template Known Secondary structure		T		B	G	G	G					T	T									T	T							T	T		B			T	T									T	T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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