Job Description A1L020 Confidence 59.15% Date Tue Apr 3 15:04:20 BST 2012 Rank 161 Aligned Residues 106 % Identity 27% Template c2xr1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		Q	G	C	K	I	K	A	L	R	A	K	T	N	T	Y	I	K	T	.	P	V	R	G	E	E	P	V	F	M	V	T	G	R	R	E	D	V	A	T	A	R	R	E	I	I	S	A	A	E	H	F	S	M	I	R	A	S	R	N	K	S	G	A	A	F	G	V	A	P	A	L	P	G	Q	V	T	I	R	V	R
Query Conservation																				.
Alig confidence																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	N	I	I	R	N	L	A	K	E	L	R	T	R	I	A	M	R	P	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	D	S	I	S	I	I	E	E	V	V	S	V	I	S	S	Y	Y	F	D	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I
Template Known Secondary structure			T											T	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.															.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																			.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		V	P	Y	R	V	V	G	L	V	V	G	P	K	G	A	T	I	K	R	I	Q	Q	Q	T	N	T	Y	I	I	T	.	.	.	P	S	R	D	R	D	P	V	F	E	I	T	G	A	P	G	N	V	E	R	A	R	E	E	I	E	T	H	I	A	V	R
Query Conservation																																.	.	.
Alig confidence												.	.	.																		.	.	.
Template Conservation												.	.	.
Template Sequence		I	E	A	E	K	P	G	L	V	I	.	.	.	G	A	T	L	R	E	I	T	K	Q	I	G	W	I	P	K	V	V	R	T	P	P	I	K	S	R	T	V	K	N	I	R	E	F	M	R	N	N	L	K	E	R	K	E	I	L	K	T	V	G	R	K
Template Known Secondary structure					S	S						.	.	.													S									S	S															T
Template Predicted Secondary structure												.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.				.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions