Job Description A1L020 Confidence 99.93% Date Tue Apr 3 15:04:20 BST 2012 Rank 4 Aligned Residues 129 % Identity 21% Template c2qndA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:fmr1 protein; PDBTitle: crystal structure of the kh1-kh2 domains from human fragile x mental2 retardation protein Resolution 1.90 Å

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		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	T	E	C	V	P	V	P	T	S	E	H	V	A	E	I	V	G	R	Q	G	C	K	I	K	A	L	R	A	K	T	N	T	Y	I	K	T	P	V	R	G	E	E	P	V	F	M	V	T	G	R	R	E	D	V	A	T	A	R	R	E	I	I	S	A	A	E	H	F	S	M	I	R	A	S	R	N	K	S	G
Query Conservation
Alig confidence										.																																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.																																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	E	Q	F	I	V	R	.	E	D	L	X	G	L	A	I	G	T	H	G	A	N	I	Q	Q	A	R	K	V	P	G	V	T	A	I	D	L	D	E	.	D	T	C	T	F	H	I	Y	G	E	D	Q	D	A	V	K	K	A	R	S	F	L	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	G	G	G							G	G	G								T	S	T	T								T	.	T	T	T							S	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.																																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.									.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																														.													.	.	.	.	.	.	.	.
Query SS confidence																																														.													.	.	.	.	.	.	.	.
Query Sequence		A	A	F	G	V	A	P	A	L	P	G	Q	V	T	I	R	V	R	V	P	Y	R	V	V	G	L	V	V	G	P	K	G	A	T	I	K	R	I	Q	Q	Q	T	N	T	.	Y	I	I	T	P	S	R	D	R	D	P	V	.	.	.	.	.	.	.	.	F	E	I	T	G	A	P	G	N	V	E	R	A	R	E
Query Conservation																																														.													.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																	.													.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	E	D	V	I	Q	V	P	R	N	L	V	G	K	V	I	G	K	N	G	K	L	I	Q	E	I	V	D	K	S	G	V	V	R	V	R	I	E	A	E	N	E	K	N	V	P	Q	E	E	G	X	V	P	F	V	F	V	G	T	K	D	S	I	A	N	A	T	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.									G	G	G							G	G	G											T		S									T	T						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		283	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	T	H	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	D	Y	H	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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