Job Description A1L020 Confidence 40.70% Date Tue Apr 3 15:04:20 BST 2012 Rank 187 Aligned Residues 111 % Identity 11% Template c2jtnA_ PDB info PDB header:protein binding/transcription Chain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex Resolution UNK

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		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.									.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.
Query Sequence		T	P	T	S	V	L	F	S	S	A	S	S	S	S	S	S	S	A	K	A	R	A	G	P	P	G	A	H	R	S	P	A	T	S	A	G	P	E	L	A	G	L	P	R	R	P	P	G	E	P	L	Q	G	F	.	.	.	.	.	.	.	.	S	K	L	G	G	G	G	L	R	S	P	G	G	G	R	D	C	M
Query Conservation																																																								.	.	.	.	.	.	.	.
Alig confidence																																							.																	.	.	.	.	.	.	.	.
Template Conservation																																							.
Template Sequence		V	G	E	P	T	L	M	G	G	E	F	G	D	E	D	E	R	L	I	T	R	L	E	N	T	Q	F	D	A	A	N	G	I	D	D	E	G	.	G	S	G	G	H	M	G	S	G	G	T	P	E	I	P	M	C	A	G	C	D	Q	H	I	L	D	R	F	I	L	K	A	L	D	R	H	W	H	S	K	C	L
Template Known Secondary structure														T	T	T	S									S		T	T	S	S	S		S	S	S	S		.	S	S	S	S	S								S			B		B	T	S	S	S	B				S						T	T					S	S	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		471	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		V	C	F	E	.	.	S	E	V	T	A	A	L	V	P	C	G	H	N	L	F	C	M	E	C	A	V	R	I	C	E	R	T	D	P	E	C	P	V	C	H	I	T	A	T
Query Conservation						.	.
Alig confidence						.	.																								.	.	.
Template Conservation																															.	.	.
Template Sequence		K	C	S	D	C	H	V	P	L	A	E	R	C	F	S	R	G	E	S	V	Y	C	K	D	D	F	F	K	R	.	.	.	F	G	T	K	C	A	A	C	Q	L	G	I	P
Template Known Secondary structure		S		T	T	T					S	S						T	T											T	.	.	.	T	S				T	T	T
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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