Job Description A1L020 Confidence 99.89% Date Tue Apr 3 15:04:20 BST 2012 Rank 9 Aligned Residues 143 % Identity 25% Template c2anrA_ PDB info PDB header:rna-binding protein/rna Chain: A: PDB Molecule:neuro-oncological ventral antigen 1; PDBTitle: crystal structure (ii) of nova-1 kh1/kh2 domain tandem with 25nt rna2 hairpin Resolution 1.94 Å

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		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.							.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		S	N	T	T	E	C	V	P	V	P	T	S	E	H	V	A	E	I	V	G	R	Q	G	C	K	I	K	A	L	R	A	K	T	N	T	Y	I	K	T	P	V	R	G	E	E	P	.	.	.	.	.	.	V	F	M	V	T	G	R	R	E	D	V	A	T	A	R	R	E	I	I	S	A	A	E	H	F	S	M	I
Query Conservation																																																.	.	.	.	.	.
Alig confidence												.																																				.	.	.	.	.	.
Template Conservation												.
Template Sequence		S	Q	Y	F	L	K	V	L	I	P	.	S	Y	A	A	G	S	I	I	G	K	G	G	Q	T	I	V	Q	L	Q	K	E	T	G	A	T	I	K	L	S	K	S	K	D	F	Y	P	G	T	T	E	R	V	C	L	I	Q	G	T	I	E	A	L	N	A	V	H	G	F	I	A	E	K	I	R	E	X	P	Q	N
Template Known Secondary structure												.										G	G	G																			T	T		B		T	T	S	S																									T
Template Predicted Secondary structure												.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		R	A	S	R	N	K	S	G	A	A	F	G	V	A	P	A	L	P	G	Q	V	T	I	R	V	R	V	P	Y	R	V	V	G	L	V	V	G	P	K	G	A	T	I	K	R	I	Q	Q	Q	T	N	T	Y	I	I	T	P	.	S	R	D	R	D	P	V	F	E	I	T	G	A	P	G	N	V	E	R	A	R	E
Query Conservation																																																											.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	R	A	N	Q	V	K	I	I	V	P	N	S	T	A	G	L	I	I	G	K	G	G	A	T	V	K	A	I	X	E	Q	S	G	A	W	V	Q	L	S	Q	K	P	L	Q	N	R	V	V	T	V	S	G	E	P	E	Q	N	R	K	A	V	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G																	G	G	G										S	S																			S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		283	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	E	T	H	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	I	I	Q	K	I	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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