Job Description A1L020 Confidence 99.91% Date Tue Apr 3 15:04:20 BST 2012 Rank 8 Aligned Residues 135 % Identity 28% Template c1j4wA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:fuse binding protein; PDBTitle: complex of the kh3 and kh4 domains of fbp with a2 single_stranded 29mer dna oligonucleotide from the fuse3 element of the c-myc oncogene Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		N	T	T	E	C	V	P	V	P	T	S	E	H	V	A	E	I	V	G	R	Q	G	C	K	I	K	A	L	R	A	K	T	N	T	Y	I	K	T	P	V	.	.	.	R	G	E	E	P	V	F	M	V	T	G	R	R	E	D	V	A	T	A	R	R	E	I	I	S	A	A	E	H	F	S	M	I	R	A	S	R
Query Conservation																																										.	.	.
Alig confidence											.																															.	.	.																																	.	.	.	.	.
Template Conservation											.																																																																		.	.	.	.	.
Template Sequence		S	H	M	I	D	V	P	I	P	.	R	F	A	V	G	I	V	I	G	R	N	G	E	M	I	K	K	I	Q	N	D	A	G	V	R	I	Q	F	K	P	D	D	G	T	T	P	E	R	I	A	Q	I	T	G	P	P	D	R	A	Q	H	A	A	E	I	I	T	D	L	L	R	S	V	Q	Q	.	.	.	.	.
Template Known Secondary structure											.										G	G	G																				T	T	S		S																														.	.	.	.	.
Template Predicted Secondary structure											.																																																																		.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		N	K	S	G	A	A	F	G	V	A	P	A	L	P	G	Q	V	T	I	R	V	R	V	P	Y	R	V	V	G	L	V	V	G	P	K	G	A	T	I	K	R	I	Q	Q	Q	T	N	T	Y	I	I	T	P	S	R	.	.	.	.	.	.	D	R	D	P	V	F	E	I	T	G	A	P	G	N	V	E	R	A	R
Query Conservation																																																									.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	N	F	I	V	P	T	G	K	T	G	L	I	I	G	K	G	G	E	T	I	K	S	I	S	Q	Q	S	G	A	R	I	E	L	Q	R	N	P	P	P	N	A	D	P	N	M	K	L	F	T	I	R	G	T	P	Q	Q	I	D	Y	A	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T							G	G	G																					T	T	T	S		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																			105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		282	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	I	E	T	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	I	E	E	K	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions