Job Description P19174 Confidence 99.38% Date Wed May 9 17:43:44 BST 2012 Rank 43 Aligned Residues 119 % Identity 8% Template c3l9bA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a Resolution 1.95 Å

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		1088	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.			.	.	.	.	1160	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		C	A	I	S	I	E	V	L	G	A	R	H	L	P	K	N	G	R	G	I	V	C	P	F	V	E	I	E	V	A	G	A	E	Y	D	S	T	K	Q	K	T	E	F	V	V	D	N	G	L	N	P	V	W	P	A	K	P	F	H	F	Q	I	S	N	P	E	F	A	.	.	F	L	R	F	V	V	Y	E	E	D
Query Conservation																																																																						.	.
Alig confidence																.	.	.	.															.	.	.	.	.																		.														.	.
Template Conservation																.	.	.	.															.	.	.	.	.																		.
Template Sequence		M	A	L	I	V	H	L	K	T	V	S	E	L	R	.	.	.	.	G	R	A	D	R	I	A	K	V	T	F	R	G	Q	.	.	.	.	.	S	F	Y	S	R	V	L	E	N	C	E	D	V	A	D	F	D	.	E	T	F	R	W	P	V	A	S	S	I	D	R	N	E	V	L	E	I	Q	I	F	N	Y	S
Template Known Secondary structure													S			.	.	.	.	S											T	T		.	.	.	.	.												S						.								S	S				T	T
Template Predicted Secondary structure																.	.	.	.															.	.	.	.	.																		.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		1166	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.				1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		M	F	S	D	Q	N	F	L	A	Q	A	T	F	P	V	K	G	L	K	T	G	Y	R	A	.	.	.	V	P	L	K	N	N	Y	S	E	D	L	E	L	A	S	L	L	I	K	I	D	I	F	P	A	K	E	N	G	D
Query Conservation																										.	.	.
Alig confidence																										.	.	.													.	.	.
Template Conservation																																									.	.	.
Template Sequence		K	V	F	S	N	K	L	I	G	T	F	R	M	V	L	Q	K	V	V	E	E	N	R	V	E	V	S	D	T	L	I	D	D	N	N	A	I	I	K	.	.	.	T	S	L	S	M	E	V	R	Y	Q	A	A	D	G	T
Template Known Secondary structure		T	T	S												S							S											T	T	S					.	.	.												T	T
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions