Job Description P19174 Confidence 99.57% Date Wed May 9 17:43:44 BST 2012 Rank 32 Aligned Residues 162 % Identity 17% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.		.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence		S	N	E	K	W	F	H	G	K	L	G	A	G	R	D	G	R	H	I	A	E	R	L	L	T	E	Y	C	I	E	T	G	A	P	D	G	S	F	L	V	R	E	S	E	T	F	V	G	D	Y	T	L	S	F	W	R	N	G	K	V	.	Q	H	C	R	I	H	S	R	Q	D	A	G	T	P	K	F	F	L	T
Query Conservation																																																														.
Alig confidence									.				.	.	.	.	.											.	.	.	.	.	.	.											.																	.												.	.	.	.	.
Template Conservation									.				.	.	.	.	.											.	.	.	.	.	.	.											.																													.	.	.	.	.
Template Sequence		Y	K	H	P	L	F	K	.	N	F	N	.	.	.	.	.	V	T	E	S	E	N	Y	L	R	S	.	.	.	.	.	.	.	S	T	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V	F	V	H	M	K	I	E	E	H	S	E	H	.	.	.	.	.	Y	T	C
Template Known Secondary structure		G	G	S	T	T			.				.	.	.	.	.											.	.	.	.	.	.	.	S	S									.	S	S	T	T										T	T											S	S		.	.	.	.	.
Template Predicted Secondary structure									.				.	.	.	.	.											.	.	.	.	.	.	.											.																													.	.	.	.	.
Template SS confidence
		790	.	.	.	.	.	.		.	.	.						800	.	.	.	.	.	.	.	.	.								810	.	.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.						.	.	850
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.		.	.	.	.	690	.	.	.	.	.	.	.		.	.	700	.	.
Predicted Secondary structure																																																															.													.
Query SS confidence																																																															.													.
Query Sequence		D	N	L	V	F	D	S	L	Y	D	L	I	T	H	Y	Q	Q	V	P	L	R	C	N	E	F	E	M	R	L	S	E	P	V	P	Q	T	N	A	H	E	S	K	E	W	Y	H	A	S	L	T	R	A	Q	A	E	H	M	L	M	R	V	.	P	R	D	G	A	F	L	V	R	K	R	N	.	E	P	N	S	Y
Query Conservation																																																															.													.
Alig confidence																							.	.										.	.	.	.	.	.	.	.	.	.	.						.	.												.													.
Template Conservation																							.	.										.	.	.	.	.	.	.	.	.	.	.						.	.
Template Sequence		S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	.	.	N	L	K	S	I	K	A	H	A	.	.	.	.	.	.	.	.	.	.	.	K	Y	F	N	S	.	.	P	E	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L
Template Known Secondary structure		T	T				S	S								T							.	.								S	T	.	.	.	.	.	.	.	.	.	.	.	T	B		S		.	.	T	T	T	S						T			S	S	S									S	S	S	T	T
Template Predicted Secondary structure																							.	.										.	.	.	.	.	.	.	.	.	.	.						.	.
Template SS confidence
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.			.	.	.	.	.	.	.	.	880												.	.	.	.	.			.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	S	F	R	A	E	G	K	I	K	H	C	R	V	Q	Q	E	G	Q	T	V	M	L	G	N	S	E	F	D	S	L	V	D	L	I	S	Y	Y	E	K
Query Conservation
Alig confidence																					.	.
Template Conservation																					.	.
Template Sequence		T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	.	.	L	T	Y	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure							S	S	S									S	S	S	.	.				T	T				S	S
Template Predicted Secondary structure																					.	.
Template SS confidence
		916	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.			.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions