21/05/2012 02:40:24 : INFO  : Run start: Mon May 21 02:40:24 BST 2012
21/05/2012 02:40:24 : INFO  : Initialised job
21/05/2012 02:40:24 : INFO  : Initialised job:
Sequence
>batch____
MAGAASPCANGCGPGAPSDAEVLHLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQI
TWSRGADKIEGAIDIREIKEIRPGKTSRDFDRYQEDPAFRPDQSHCFVILYGMEFRLKTL
SLQATSEDEVNMWIKGLTWLMEDTLQAPTPLQIERWLRKQFYSVDRNREDRISAKDLKNM
LSQVNYRVPNMRFLRERLTDLEQRSGDITYGQFAQLYRSLMYSAQKTMDLPFLEASTLRA
GERPELCRVSLPEFQQFLLDYQGELWAVDRLQVQEFMLSFLRDPLREIEEPYFFLDEFVT
FLFSKENSVWNSQLDAVCPDTMNNPLSHYWISSSHNTYLTGDQFSSESSLEAYARCLRMG
CRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVASEYPVILSIEDHCSIA
QQRNMAQYFKKVLGDTLLTKPVEISADGLPSPNQLKRKILIKHKKLAEGSAYEEVPTSMM
YSENDISNSIKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEVSS
STELHSNEKWFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVRESETFVGDYTLSFW
RNGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCNEFEMRLSEPVPQT
NAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQE
GQTVMLGNSEFDSLVDLISYYEKHPLYRKMKLRYPINEEALEKIGTAEPDYGALYEGRNP
GFYVEANPMPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLW
FPSNYVEEMVNPVALEPEREHLDENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSIS
MASVAHWSLDVAADSQEELQDWVKKIREVAQTADARLTEGKIMERRKKIALELSELVVYC
RPVPFDEEKIGTERACYRDMSSFPETKAEKYVNKAKGKKFLQYNRLQLSRIYPKGQRLDS
SNYDPLPMWICGSQLVALNFQTPDKPMQMNQALFMTGRHCGYVLQPSTMRDEAFDPFDKS
SLRGLEPCAISIEVLGARHLPKNGRGIVCPFVEIEVAGAEYDSTKQKTEFVVDNGLNPVW
PAKPFHFQISNPEFAFLRFVVYEEDMFSDQNFLAQATFPVKGLKTGYRAVPLKNNYSEDL
ELASLLIKIDIFPAKENGDLSPFSGTSLRERGSDASGQLFHGRAREGSFESRYQQPFEDF
RISQEHLADHFDSRERRAPRRTRVNGDNRL

21/05/2012 02:40:24 : INFO  : Checked sequence
21/05/2012 02:40:24 : INFO  : Finding homologues with PSI-BLAST
21/05/2012 02:40:24 : INFO  : PSI-BLAST 3 iterations
21/05/2012 02:44:27 : INFO  : PSI-BLAST 5 iterations
21/05/2012 02:49:50 : INFO  : Finished PSI-BLAST
21/05/2012 02:49:50 : INFO  : Running Buildali to generate a3m file
21/05/2012 03:01:52 : INFO  : Converting to HMM
21/05/2012 03:01:58 : INFO  : Calibrating HMM
21/05/2012 03:02:24 : INFO  : Searching HMM database
21/05/2012 03:21:50 : INFO  : Finished buildali
21/05/2012 03:21:50 : INFO  : Predicting secondary structure
21/05/2012 03:21:51 : INFO  : Predicted secondary structure (PSI-Pred)
21/05/2012 03:21:51 : INFO  : Predicting Disordered regions
21/05/2012 03:21:51 : INFO  : Predicted Disorder (Disopred)
21/05/2012 03:21:51 : INFO  : Running memsat_svm check
21/05/2012 03:22:31 : INFO  : Running memsat_svm full
21/05/2012 03:25:18 : INFO  : Predicted Transmembrane (memsat_svm) ID '1975ec919504b475'
21/05/2012 03:25:18 : INFO  : Initialising fold library search
21/05/2012 03:25:18 : INFO  : Initialised search input
21/05/2012 03:25:18 : INFO  : Building Ensemble models
21/05/2012 03:25:18 : INFO  : Building hh.c3ohmB_.model.1.pdb
21/05/2012 03:25:19 : INFO  : Building hh.c3qr0A_.model.2.pdb
21/05/2012 03:25:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/hh.c3qr0A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/c3qr0A_.2.pdb
21/05/2012 03:25:20 : INFO  : Building hh.c2fjuB_.model.3.pdb
21/05/2012 03:25:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/hh.c2fjuB_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/c2fjuB_.3.pdb
21/05/2012 03:25:20 : INFO  : Building hh.c1djyB_.model.4.pdb
21/05/2012 03:25:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/hh.c1djyB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1975ec919504b475/c1djyB_.4.pdb
21/05/2012 03:25:21 : INFO  : Building c3ohmB_.1.pdb
21/05/2012 03:25:21 : INFO  : Building c3qr0A_.2.pdb
21/05/2012 03:25:22 : INFO  : Building c2fjuB_.3.pdb
21/05/2012 03:25:22 : INFO  : Building c1djyB_.4.pdb
21/05/2012 03:25:23 : INFO  : Building d2zkmx4.5.pdb
21/05/2012 03:25:24 : INFO  : Building d1qasa3.6.pdb
21/05/2012 03:25:25 : INFO  : Building c3gqiB_.7.pdb
21/05/2012 03:25:26 : INFO  : Building c2b3oA_.8.pdb
21/05/2012 03:25:26 : INFO  : Building c3ps5A_.9.pdb
21/05/2012 03:25:27 : INFO  : Building c2shpA_.10.pdb
21/05/2012 03:25:27 : INFO  : Building d2zkmx2.11.pdb
21/05/2012 03:25:28 : INFO  : Building d1qasa2.12.pdb
21/05/2012 03:25:28 : INFO  : Building c2oq1A_.13.pdb
21/05/2012 03:25:29 : INFO  : Building c2lqnA_.14.pdb
21/05/2012 03:25:29 : INFO  : Building c2ozoA_.15.pdb
21/05/2012 03:25:29 : INFO  : Building c1a81E_.16.pdb
21/05/2012 03:25:30 : INFO  : Building c2eyzA_.17.pdb
21/05/2012 03:25:30 : INFO  : Building d2zkmx3.18.pdb
21/05/2012 03:25:30 : INFO  : Building c2fjlA_.19.pdb
21/05/2012 03:25:31 : INFO  : Building d2zkmx1.20.pdb
21/05/2012 03:26:07 : INFO  : Finished HH model building
21/05/2012 03:26:07 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
21/05/2012 03:26:16 : INFO  : html domain output complete ID '1975ec919504b475'
21/05/2012 07:32:53 : INFO  : Run end  : Mon May 21 07:32:53 BST 2012
