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Job DescriptionP06241
Confidence100.00%DateSat Jun 16 10:36:34 BST 2012
Rank40Aligned Residues246
% Identity23%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   268.270.........280.........290.........300.........310 .........320.........330...... ...340...
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Query Sequence  RESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPES. . . FLEEAQIMKKLKHDKLVQLYAVVSEE. PIYIVTE
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVLAG. QEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD
Template Known Secondary structure 

TTTT.S
S


BTTB


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   10.........20.........30.... .....40.........50.........60.........70.........80........
 
   344.....350.........360.........370.........380.........390.........400... ......410.........420
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Query Sequence  YMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLI. . . CKIADFGLARLIEDNEY
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Template Sequence  LVTGGELFEDIVA. . REYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ
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B

B..
S


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SSTTSBSSTT




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B


TT

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   91........100... ......110.........120.........130.........140.........150.........160........
 
   421........430.........440.........450.........460.........470.........480.... .....490.......
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Query Sequence  TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYR. . . MPCPQDCPISLHE
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Template Sequence  AWFGFAGTP. GYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
Template Known Secondary structure  B


S
S
G.GG

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   169170....... ..180.........190.........200........ .210.........220.........230.........240......
 
   498.500.........510........
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Query Sequence  LMIHCWKKDPEERPTFEYLQS
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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