18/06/2012 13:30:36 : INFO  : Run start: Mon Jun 18 13:30:36 BST 2012
18/06/2012 13:30:36 : INFO  : Initialised job
18/06/2012 13:30:36 : INFO  : Initialised job:
Sequence
>batch____
MGCVQCKDKEATKLTEERDGSLNQSSGYRYGTDPTPQHYPSFGVTSIPNYNNFHAAGGQG
LTVFGGVNSSSHTGTLRTRGGTGVTLFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWW
EARSLTTGETGYIPSNYVAPVDSIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESET
TKGAYSLSIRDWDDMKGDHVKHYKIRKLDNGGYYITTRAQFETLQQLVQHYSERAAGLCC
RLVVPCHKGMPRLTDLSVKTKDVWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKT
LKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKDGEGR
ALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEY
TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVE
RGYRMPCPQDCPISLHELMIHCWKKDPEERPTFEYLQSFLEDYFTATEPQYQPGENL

18/06/2012 13:30:36 : INFO  : Checked sequence
18/06/2012 13:30:36 : INFO  : Finding homologues with PSI-BLAST
18/06/2012 13:30:36 : INFO  : PSI-BLAST 3 iterations
18/06/2012 13:33:39 : INFO  : PSI-BLAST 5 iterations
18/06/2012 13:37:44 : INFO  : Finished PSI-BLAST
18/06/2012 13:37:44 : INFO  : Running Buildali to generate a3m file
18/06/2012 15:26:06 : INFO  : Converting to HMM
18/06/2012 15:26:32 : INFO  : Calibrating HMM
18/06/2012 15:26:45 : INFO  : Searching HMM database
18/06/2012 15:38:04 : INFO  : Finished buildali
18/06/2012 15:38:04 : INFO  : Predicting secondary structure
18/06/2012 15:38:04 : INFO  : Predicted secondary structure (PSI-Pred)
18/06/2012 15:38:04 : INFO  : Predicting Disordered regions
18/06/2012 15:38:04 : INFO  : Predicted Disorder (Disopred)
18/06/2012 15:38:04 : INFO  : Running memsat_svm check
18/06/2012 15:40:39 : INFO  : Globular protein
18/06/2012 15:40:39 : INFO  : Predicted Transmembrane (memsat_svm) ID '18873351f96039c8'
18/06/2012 15:40:39 : INFO  : Initialising fold library search
18/06/2012 15:40:39 : INFO  : Initialised search input
18/06/2012 15:40:39 : INFO  : Building Ensemble models
18/06/2012 15:40:39 : INFO  : Building hh.c1y57A_.model.1.pdb
18/06/2012 15:40:39 : INFO  : Building hh.c2h8hA_.model.2.pdb
18/06/2012 15:40:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/18873351f96039c8/hh.c2h8hA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/18873351f96039c8/c2h8hA_.2.pdb
18/06/2012 15:40:40 : INFO  : Building c1y57A_.1.pdb
18/06/2012 15:40:40 : INFO  : Building c2h8hA_.2.pdb
18/06/2012 15:40:42 : INFO  : Building c2fo0A_.3.pdb
18/06/2012 15:40:42 : INFO  : Building c1oplA_.4.pdb
18/06/2012 15:40:43 : INFO  : Building c2c0iA_.5.pdb
18/06/2012 15:40:43 : INFO  : Building c1k9aB_.6.pdb
18/06/2012 15:40:44 : INFO  : Building c2ozoA_.7.pdb
18/06/2012 15:40:44 : INFO  : Building c3cblA_.8.pdb
18/06/2012 15:40:45 : INFO  : Building c2j0kB_.9.pdb
18/06/2012 15:40:45 : INFO  : Building d1qcfa3.10.pdb
18/06/2012 15:40:46 : INFO  : Building d1qpca_.11.pdb
18/06/2012 15:40:47 : INFO  : Building d1opja_.12.pdb
18/06/2012 15:40:47 : INFO  : Building c3zzwA_.13.pdb
18/06/2012 15:40:48 : INFO  : Building d1u59a_.14.pdb
18/06/2012 15:40:48 : INFO  : Building d1k2pa_.15.pdb
18/06/2012 15:40:48 : INFO  : Building d1fmka3.16.pdb
18/06/2012 15:40:49 : INFO  : Building c3pfqA_.17.pdb
18/06/2012 15:40:49 : INFO  : Building c3g0eA_.18.pdb
18/06/2012 15:40:53 : INFO  : Building c2acxB_.19.pdb
18/06/2012 15:40:54 : INFO  : Building c2ivsA_.20.pdb
18/06/2012 15:40:58 : INFO  : Finished HH model building
18/06/2012 15:40:58 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/06/2012 15:41:02 : INFO  : html domain output complete ID '18873351f96039c8'
18/06/2012 16:54:52 : INFO  : Run end  : Mon Jun 18 16:54:52 BST 2012
