 |
| Job Description | A0PG75 | | Confidence | 9.58% | Date | Fri May 25 09:45:32 BST 2012 |
| Rank | 42 | Aligned Residues | 53 |
| % Identity | 9% | Template | c2pnyA_ |
| PDB info |
PDB header:isomerase | Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; |
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
|
| Resolution | 1.81 Å |
|
| | |
87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
140 | . | . | . | . | . | . |
| Predicted Secondary structure | |
 | | | |  |
|
|
|
|
| | | | | | | |
|
|
| | | | | |
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
| | | | | | | |
|
|
|
| | | | | | |
|
|
| | . | . | . | . | . | . | |
|
|
|
|
|
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
| Query Sequence | |
K | Y | E | I | K | N | S | L | G | Q | R | I | Y | F | A | V | E | E | S | I | C | F | N | R | T | F | C | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
T | L | R | S | C | T | L | R | I | T | D | N | S | G | R | E | V | I | T | V | N | R | P | L | R | . |
. |
. |
. |
. |
. |
C | N | S | C | W | C | P |
| Query Conservation | |
|
| |
| |
| | |
|
| |
| | |
| |
|
|
| | | | |
| |
| |
| . | . | . | . | . | . | . | . | . | | |
| |
| |
| |
| |
| | |
| |
|
|
| | | |
|
| | | . | . | . | . | . | . |
| | | |
| | |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| Template Conservation | |
| |
|
|
|
|
| |
| | |
|
| | | . | . | . | . | . | . | . | |
| | | |
| | | | | | | |
|
|
|
|
|
|
|
|
| |
|
|
| | |
| |
|
|
|
|
|
|
| | |
| | | |
|
| |
| |
|
| |
|
|
| Template Sequence | |
M | L | I | V | V | D | E | N | D | K | V | I | G | A | D | . |
. |
. |
. |
. |
. |
. |
T | K | R | N | C | H | L | N | E | N | I | E | K | G | L | L | H | R | A | F | S | V | V | L | F | N | T | K | N | R | I | L | I | Q | Q | R | S | D | T | K | V | T | F | P | G | Y | F | T | D | S | C | S | S |
| Template Known Secondary structure | |
| | | | |
| T | T |
|
| | | | | | . | . | . | . | . | . | . | |  | | | | T | B | | | | | T | T | T |
|
| | | | | | | | | |
| T | T |
|
| | | | | | |
| T | T |
| S | S | S | T | T |
| B |
|
| S | | | |
| Template Predicted Secondary structure | |
| | | | |
|
|
|
|
| | | | | | . | . | . | . | . | . | . | | | | | | |
|
|
|
|
|
|
|
|
| | | | | | | | | | |
|
|
|
|
| | | | | |
|
|
|
|
|
|
|
|
|
|
| | | | |
|
|
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
