Job Description A0AVT1 Confidence 100.00% Date Tue Apr 3 14:58:27 BST 2012 Rank 14 Aligned Residues 173 % Identity 20% Template c3vh3A_ PDB info PDB header:metal binding protein/protein transport Chain: A: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7; PDBTitle: crystal structure of atg7ctd-atg8 complex Resolution 2.00 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	I	G	D	T	L	C	Q	K	L	Q	N	L	N	I	F	L	V	G	C	G	A	I	G	C	E	M	L	K	N	F	A	L	L	G	V	G	T	S	K	E	K	G	M	I	T	V	T	D	P	D	L	I	E	K	S	N	L	N	R	Q	F	L	F	R	P	H	H	I	Q	K	P	K	S	Y	T	A	A	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		R	I	L	P	D	L	N	L	D	I	I	K	N	T	K	V	L	L	L	G	A	G	T	L	G	C	Y	V	S	R	A	L	I	A	W	G	V	R	.	.	.	.	.	.	K	I	T	F	V	D	N	G	T	V	S	Y	S	N	P	V	R	Q	A	L	Y	N	F	E	D	C	G	K	P	K	A	E	L	A	A	A
Template Known Secondary structure			T		T	T								T									S													T	T			.	.	.	.	.	.									B			T	T	S	T	T	T	S	T	T			G	G	G	T	T	S	B
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.							350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.												.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query Sequence		A	T	L	K	I	N	S	Q	I	K	I	D	A	H	L	N	K	V	C	P	T	T	E	T	I	Y	N	D	E	.	.	.	.	.	.	.	.	.	.	.	F	Y	T	K	Q	D	V	I	I	T	A	L	D	N	V	E	A	R	R	Y	V	D	S	R	C	L	A	N	L	R	P	L	L	D	S	G	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation
Template Sequence		S	L	K	R	I	F	P	L	M	D	A	T	G	V	K	L	S	I	P	M	I	G	H	K	L	V	N	E	E	A	Q	H	K	D	F	D	R	L	R	A	L	I	K	E	H	D	I	I	F	L	L	V	D	S	R	E	S	R	W	L	P	S	L	L	S	N	I	E	N	K	T	V	I	N	A	A	L	G	F	D
Template Known Secondary structure								T	T													T	T	S			S																				S							S	S	T	G	G	G										T	T										S	S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
				593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.			.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure		.	.																									.	.
Query SS confidence		.	.																									.	.
Query Sequence		.	.	T	M	G	T	K	G	H	T	E	V	I	V	P	H	L	T	E	S	Y	N	S	H	R	D	.	.	P	P	E	E	E	I	P	F	C	T
Query Conservation		.	.																									.	.
Alig confidence		.	.																									.	.
Template Conservation
Template Sequence		S	Y	L	V	M	R	H	G	N	R	D	E	Q	S	S	K	Q	L	G	C	Y	F	C	H	D	V	V	A	P	T	D	S	L	T	D	R	T	L
Template Known Secondary structure													S	S		S			B			T	T	T	T	S	S	S						S	T	T			T
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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