Job Description A0AVT1 Confidence 92.48% Date Tue Apr 3 14:58:27 BST 2012 Rank 141 Aligned Residues 105 % Identity 16% Template c3fi9B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of malate dehydrogenase from porphyromonas2 gingivalis Resolution 1.90 Å

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		59	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure												.																		.
Query SS confidence												.																		.
Query Sequence		M	A	K	S	H	V	F	L	S	G	.	M	G	G	L	G	L	E	I	A	K	N	L	V	L	A	G	I	.	K	A	V	T	I	H	D	T	E	K	C	Q	A	W	D	L	G	T	N	F	F	L	S	E	D	D	V	V	N	K	R	N	R	A	E	A	V	L	K	H	I	A	E	L	N	P	Y	V	H	V	T
Query Conservation												.																		.
Alig confidence												.																		.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	E	E	K	L	T	I	V	G	A	A	G	M	I	G	S	N	M	A	Q	T	A	A	M	M	R	L	T	P	N	L	C	L	Y	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	V	G	L	E	G	V	A	E	E	I	R	H	C	G	F	E	G	L	N	L
Template Known Secondary structure		S		S	S						S	T	T	S													T	T			S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40																						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.
Query Sequence		S	S	S	V	P	F	N	E	T	T	D	L	S	F	L	D	K	Y	Q	C	V	V	L	T	E	M	K	L	P	L	Q	K	K	I	N	.	.	.	.	.	.	.	.	D	F	C	R	S	Q	C	P	P	I	K	F	I	S	A	D	V	H
Query Conservation																																					.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.
Template Sequence		T	F	T	S	D	I	K	E	A	.	.	.	.	.	L	T	D	A	K	Y	I	V	S	S	G	G	T	R	E	D	L	L	K	G	N	A	E	I	A	A	Q	L	G	K	D	I	K	S	Y	C	P	D	C	K	H	V	I	I	I	F	N
Template Known Secondary structure					S						.	.	.	.	.		T	T																																		T	T								S	S
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.						.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions