Job Description A0AVT1 Confidence 86.90% Date Tue Apr 3 14:58:27 BST 2012 Rank 272 Aligned Residues 98 % Identity 17% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		S	V	E	I	D	D	A	L	Y	S	R	Q	R	Y	V	L	G	D	T	A	M	Q	K	M	A	K	S	H	V	F	L	S	G	M	.	.	G	G	L	G	L	E	I	A	K	N	L	V	L	A	G	I	K	A	V	T	I	H	D	T	E	K	C	Q	A	W	D	L	G	T	N	F	F	L	S	E	D	D	V	V
Query Conservation																																				.	.
Alig confidence																											.	.								.	.											.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation																											.	.																				.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Sequence		V	T	D	Y	D	E	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	H	P	K	P	E	.	.	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	H	.	.	.	G	T	V	E	H	C	D	L	V	D	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	V	.
Template Known Secondary structure				T	T	T														T	T	S	S				.	.								T	T	S							T	T		.	.	.	T	T									S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Predicted Secondary structure																											.	.																				.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.																.	130	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.
Query SS confidence																			.	.	.
Query Sequence		N	K	R	N	R	A	E	A	V	L	K	H	I	A	E	L	N	.	.	.	P	Y	V	H	V	T	S	S	S	V	P	F	N	E	T	T	D	L	S	F	L	D	K	Y	Q	C	V	V	L
Query Conservation																			.	.	.
Alig confidence		.	.	.	.	.													.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	S	L	A	D	P	R	A	T	V	R	V	G	D	G	L	A	F	V	R	Q	T	P	D	N	T	Y	D	V	V	I	I
Template Known Secondary structure		.	.	.	.	.													G	G	G	G		T	T						S								T	S		T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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