Job Description A0AVT1 Confidence 100.00% Date Tue Apr 3 14:58:27 BST 2012 Rank 2 Aligned Residues 495 % Identity 28% Template c1y8qD_ PDB info PDB header:ligase Chain: D: PDB Molecule:ubiquitin-like 2 activating enzyme e1b; PDBTitle: sumo e1 activating enzyme sae1-sae2-mg-atp complex Resolution 2.25 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	I	G	D	T	L	C	Q	K	L	Q	N	L	N	I	F	L	V	G	C	G	A	I	G	C	E	M	L	K	N	F	A	L	L	G	V	G	T	S	K	E	K	G	M	I	T	V	T	D	P	D	L	I	E	K	S	N	L	N	R	Q	F	L	F	R	P	H	H	I	Q	K	P	K	S	Y	T	A	A	D
Query Conservation
Alig confidence																																								.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.
Template Sequence		R	G	L	P	R	E	L	A	E	A	V	A	G	G	R	V	L	V	V	G	A	G	G	I	G	C	E	L	L	K	N	L	V	L	T	G	F	S	.	.	.	.	.	.	H	I	D	L	I	D	L	D	T	I	D	V	S	N	L	N	R	Q	F	L	F	Q	K	K	H	V	G	R	S	K	A	Q	V	A	K	E
Template Known Secondary structure		T	T	S																			S														T			.	.	.	.	.	.									B			G	G	G	G	G	T		T	T			G	G	G	T	T	S	B
Template Predicted Secondary structure																																								.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	K	I	N	S	Q	I	K	I	D	A	H	L	N	K	V	C	P	T	T	E	T	I	Y	N	D	E	F	Y	T	K	Q	D	V	I	I	T	A	L	D	N	V	E	A	R	R	Y	V	D	S	R	C	L	A	N	L	R	P	L	L	D	S	G	T	M	G	T	K	G	H	T	E	V	I	V	P	H	L
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		S	V	L	Q	F	Y	P	K	A	N	I	V	A	Y	H	D	S	I	M	N	P	D	.	.	.	Y	N	V	E	F	F	R	Q	F	I	L	V	M	N	A	L	D	N	R	A	A	R	N	H	V	N	R	M	C	L	A	A	D	V	P	L	I	E	S	G	T	A	G	Y	L	G	Q	V	T	T	I	K	K	G	V
Template Known Secondary structure				T	T	T		T	T								S		T	T	S	T	T	.	.	.	S						T	T		S																							T										T	T									T	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	S	Y	N	S	H	R	D	P	P	E	E	E	I	P	F	C	T	L	K	S	F	P	A	A	I	E	H	T	I	Q	W	A	R	D	K	F	E	S	S	F	S	H	K	P	S	L	F	N	K	F	W	Q	T	Y	S	S	A	E	E	V	L	Q	K	I	Q	S	G	H	S	L	E	G	C	F	Q	V	I	K
Query Conservation
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	C	Y	E	C	H	P	K	P	T	Q	R	T	F	P	G	A	T	I	R	N	T	P	S	E	P	I	H	C	I	V	W	A	K	Y	L	F	N	Q	L	F	G	E	E	D	A	D	Q	E	V	S	P	D	R	A	D	P	E	A	A	W	E	I	S	T	K	E	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S			T	T	S	S															T				S																T	S				G	G	G			S			S	S		T	T	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	S	R	R	P	R	N	W	S	Q	C	V	E	L	A	R	L	K	F	E	K	Y	F	N	H	K	A	L	Q	L	L	H	C	F	P	L	D	I	R	L	K	D	G	S	L	F	W	Q	S	P	K	R	P	P	S	P	I	K	F	D	L	N	E	P	L	H	L	S	F	L	Q	N	A	A	K	L	Y	A	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	W	A	K	S	T	G	Y	D	P	V	K	L	F	T	K	L	F	K	D	D	I	R	Y	L	L	T	M	.	.	.	.	.	.	.	.	.	.	D	K	L	W	R	.	K	R	K	P	P	V	P	L	D	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.					T	T	S											T						T	T	S		.	.	.	.	.	.	.	.	.	.	T	T	T	T	T	.	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.						.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.											270	.	.	.	.		.	.	.	.	.	280	.	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	C	I	P	F	A	E	E	D	L	S	A	D	A	L	L	N	I	L	S	E	V	K	I	Q	E	F	K	P	S	N	K	V	V	Q	T	D	E	T	A	R	K	P	D	H	V	P	I	S	S	E	D	E	R	N	A	I	F	Q	L	E	K	A	I	L	S	N	E	A	T	K	S	D	L	Q	M	A	V	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	Q	S	Q	L	G	L	K	D	Q	Q	V	L	D	V	K	S	Y	A	R	L	F	S	K	S	I	E	T	L	R	V	H	L	.	.	A	E	K	G	D	G	A	E	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T						G	G	G	S																							.	.					T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template SS confidence
																																					286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	E	K	D	D	D	H	N	G	H	I	D	F	I	T	A	A	S	N	L	R	A	K	M	Y	S	I	E	P	A	D	R	F	K	T	K	R	I	A	G	K	I	I	P	A	I	A	T	T	T	A	T	V	S	G	L	V	A	L	E	M	I	K	V	T	G	G	Y	P	F	E	A	Y	K	N	C	F	L	N
Query Conservation
Alig confidence										.	.																																																											.
Template Conservation										.	.																																																											.
Template Sequence		I	W	D	K	D	D	P	S	.	.	A	M	D	F	V	T	S	A	A	N	L	R	M	H	I	F	S	M	N	M	K	S	R	F	D	I	K	S	M	A	G	N	I	I	P	A	I	A	T	T	N	A	V	I	A	G	L	I	V	L	E	G	L	K	I	L	S	G	.	K	I	D	Q	C	R	T	I	F	L	N
Template Known Secondary structure					T	T				.	.																T	T															T																									T	T	.		G	G	G
Template Predicted Secondary structure										.	.																																																											.
Template SS confidence
		343	.	.	.	.	.	.	350			.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.
		928	.	930					.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.		.	.	.	.	.	980	.				.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.																																													.								.	.	.
Query SS confidence					.	.	.	.																																													.								.	.	.
Query Sequence		L	A	I	.	.	.	.	P	I	V	V	F	T	E	T	T	E	V	R	K	T	K	I	R	N	G	I	S	F	T	I	W	D	R	W	T	V	H	G	K	E	D	F	T	L	L	D	F	I	N	A	.	V	K	E	K	Y	G	I	.	.	.	E	P	T	M	V	V	Q	G	V	K	M	L	Y	V	P	V	M	P
Query Conservation					.	.	.	.																																													.								.	.	.
Alig confidence					.	.	.	.																																.	.	.											.								.	.	.
Template Conservation																																								.	.	.
Template Sequence		K	Q	P	N	P	R	K	K	L	L	V	P	C	A	L	D	P	P	N	P	N	C	Y	V	C	A	S	K	P	E	V	T	V	R	L	N	V	H	.	.	.	K	V	T	V	L	T	L	Q	D	K	I	V	K	E	K	F	A	M	V	A	P	D	V	Q	I	E	D	G	K	G	T	I	L	I	S	S	E	E	G
Template Known Secondary structure		S	S			T	T	S		S											T	T		T	T	T	S	S	S									T	T	.	.	.	T		B							T						S			S	S							S	S	S							S	S	T	T
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.				.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.								.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.
Query Sequence		G	H	A	K	R	L	K	L	T	M	H	K	L	V	K	P	T	T	E	K	K	Y	V	D	.	.	.	.	.	.	.	L	T	V	S	F	A	P	D	I	D	G	D	E	D	L	P	G	P	P	V
Query Conservation																										.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	E	A	N	N	H	K	K	L	S	E	F	G	I	R	N	G	S	R	L	Q	A	D	D	F	L	Q	D	Y	T	L	L	I	N	I	L	H	S	E	D	L	G	K	D	V	E	F	E	V	V
Template Known Secondary structure		T	T	T	T	T	T	T	S	B	G	G	G	G	T			T	T								T	T	T	T											S		S		S	S						S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.