Job Description A0AVT1 Confidence 86.94% Date Tue Apr 3 14:58:27 BST 2012 Rank 270 Aligned Residues 133 % Identity 17% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

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		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.				.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.															.	.	.	.	520
Predicted Secondary structure																																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	N	L	N	I	F	L	V	G	C	G	A	I	G	C	E	M	L	K	N	F	A	L	L	G	V	G	T	S	K	E	K	G	M	I	T	V	T	D	P	.	.	.	D	L	I	E	K	S	N	L	N	R	Q	F	L	F	R	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	Q	K	P
Query Conservation																																											.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.								.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		V	P	P	A	R	V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	R	L	G	A	.	.	.	.	.	.	.	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T	T	A	L	I	P
Template Known Secondary structure													S													T	T		.	.	.	.	.	.	.							S	S	T	T	S					T	T	T	T															T	T		S									T
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.								.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.
		521	.					.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.							.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure				.	.	.	.																																																					.	.	.	.	.	.
Query SS confidence				.	.	.	.																																																					.	.	.	.	.	.
Query Sequence		K	S	.	.	.	.	Y	T	A	A	D	A	T	L	K	I	N	S	Q	I	K	I	D	A	H	L	N	K	V	C	P	T	T	E	T	I	Y	N	D	E	F	Y	T	K	Q	D	V	I	I	T	A	L	D	N	V	E	A	R	.	.	.	.	.	.	R	Y	V	D	S	R	C	L	A	N	L	R	P	L	L	D
Query Conservation				.	.	.	.																																																					.	.	.	.	.	.
Alig confidence				.	.	.	.																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	P	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L	L	N	F	L	T	P	H	V	D
Template Known Secondary structure		T	S						S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G																	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1069	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.
		591	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	T	M	G	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	T	K	T	L	V
Template Known Secondary structure		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1149	1150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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