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Job DescriptionQ96KQ4
Confidence31.39%DateWed Jun 6 09:44:33 BST 2012
Rank418Aligned Residues268
% Identity10%Templatec3r6nA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:desmoplakin; PDBTitle: crystal structure of a rigid four spectrin repeat fragment of the2 human desmoplakin plakin domain
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90.........100.........110.........120.........130........
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Query Sequence  DHMMYEHLQKWGPRREEVKFFLRHEDSPTENSEQGGRQTQEQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQ
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Template Sequence  DEFTKHVTSECLGWMRQQRAEMDMVA. . WGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIYQLEEEYENL
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   181........190.........200...... ...210.........220.........230.........240.........250........
 
   139140.........150.........160.........170... ......180.........190.........200.....
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Query Sequence  QQQIENQQQMLVAKEQRLHFLKQQERRQQQSISEN. . . . . . . . . . . . . EKLQKLKERVEAQENKLKKIRAMRGQVDYSKI
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Template Sequence  LKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQEAFSIRMSQLEVKEKELNKLKQESDQLVL
Template Known Secondary structure  S


STT


TT
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   259260.........270.........280.........290.........300.........310.........320.........330........
 
   206...210.........220.........230.........240.........250.........260.........270.........280.....
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Query Sequence  MNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYNGKLTGPAAVELKRLYQELQIRNQLNQEQ
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Template Sequence  NQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDS. IRKKYPCDKNMPLQHLLEQ
Template Known Secondary structure  TT
TT.S


TT

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   339340.........350.........360.........370.........380.........390........ .400.........410.......
 
   286...290.........300.........310.........320.........
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Query Sequence  NSKLQQQKELLNKRNMEVAMMDKRISELRERLYGKKIQLNRVNG
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Template Sequence  IKELEKEREKILEYKRQVQNLVNKSKKIVQLKPRNPDYRSNKPI
Template Known Secondary structure  TT



GGGSTT


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   418.420.........430.........440.........450.........460.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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