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Job DescriptionQ96KQ4
Confidence94.89%DateWed Jun 6 09:44:33 BST 2012
Rank306Aligned Residues294
% Identity8%Templatec1ciiA_
PDB info PDB header:transmembrane proteinChain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  ETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRREEVKFFLRHEDSPTENSEQGGRQTQEQRTQR
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Template Sequence  REYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSEL
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   142.......150.........160.........170.........180.........190.........200.........210.........220.
 
   105....110.........120.........130.........140.........150.........160.........170.........
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Query Sequence  NVINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKLQKL. . . . .
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Template Sequence  E. . KNGGAALAVLDAQQARLLGQQTRNDRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGR
Template Known Secondary structure  ..SS
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   222 .......230.........240.........250.........260.........270.........280.........290.........
 
   180.........190..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KERVEAQENKLKK
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Template Conservation                                                  
                           
   
Template Sequence  SSTNDSIVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQR
Template Known Secondary structure 

S
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TS
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   300.........310.........320.........330.........340.........350.........360.........370.........
 
   193......200.........210.........220.........230.........240.........250.........260.........270..
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Query Sequence  IRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYNGKLTGPAAVELKRLY
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Template Conservation 
            

      
     
       
  
  
 
 
   
  
            
              
Template Sequence  LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEF
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   380.........390.........400.........410.........420.........430.........440.........450.........
 
   273......280.........290.........300.........310.........320
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Query Sequence  QELQIRNQLNQEQNSKLQQQKELLNKRNMEVAMMDKRISELRERLYGK
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Template Conservation                
  

      
 
          

    
  
Template Sequence  LKSVSEKYGAKAEQLAREMAGQAKGKKIRNVEEALKTYEKYRADINKK
Template Known Secondary structure 
TTTTT
B


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   460.........470.........480.........490.........500.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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