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Job DescriptionQ96KQ4
Confidence67.63%DateWed Jun 6 09:44:33 BST 2012
Rank345Aligned Residues297
% Identity8%Templatec2oexB_
PDB info PDB header:protein transportChain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70.... .....80.........90........
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Query Sequence  ETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRRE. . . . . . EVKFFLRHEDSPTENSEQGGRQTQ
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Template Conservation   

       
     
   
  
             
                   
                      
Template Sequence  DLVNRSIAQXREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESL
Template Known Secondary structure  TTTTGGGG

STTS

TTT
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   376...380.........390.........400.........410.........420.........430.........440.........450.....
 
   99100.........110.........120.........130.........140.........150.........160.........170...
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Query Sequence  EQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISEN. . . . .
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Template Conservation    
                             
          
         
             
            
Template Sequence  RLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP
Template Known Secondary structure  SSTT

S

TTTTS
TTS
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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   174.....180.........190.........200.........210.........220.........230.........240..
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Query Sequence  . . . . . . . . . . . EKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQL
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Template Conservation                     
             
                                              
Template Sequence  SANPAKTXQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDXTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV
Template Known Secondary structure 




TTTTT
T



SSS

T
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   243......250.........260.. .......270.........280.........290.........300.........310....
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Query Sequence  EDLKKGKLNGFQSYNGKLTG. . . . . . . . PAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEVAMMDKRISELR
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Template Conservation           
                              
        

   
 
       
   
  

  
 
  
Template Sequence  QESLKKQEGLLKNIQVSHQEFSKXKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDIV
Template Known Secondary structure  TTTS


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   616...620.........630.........640.........650.........660.........670.........680.........690.....
 
   315....320.
Predicted Secondary structure 
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Query Sequence  ERLYGKK
Query Conservation         
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Template Conservation    
  

Template Sequence  FARKTER
Template Known Secondary structure  T
Template Predicted Secondary structure 

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   696...700..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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