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Job DescriptionQ96KQ4
Confidence79.73%DateWed Jun 6 09:44:33 BST 2012
Rank331Aligned Residues173
% Identity12%Templatec2xgjA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80........
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Query Sequence  TTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRREEVKFFLRHEDSPTE. . . . . . . . . . . . . . . . .
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Template Sequence  QNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGW
Template Known Secondary structure 
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SS


S
TTSGGG

TTTTT
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   613......620.........630.........640.........650.........660.........670.........680.........690..
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                        
            
      
      
      
                    
  
Template Sequence  GAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGN
Template Known Secondary structure 


SS
TT



TTTTTTS
GGG

TT




TT

B

TT


GGG
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   693......700.........710.........720.........730.........740.........750.........760.........770..
 
   8990.........100.........110.........120.........130.........140.........150.........
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Query Sequence  . . . . . . . . . NSEQGGRQTQEQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFL
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Template Conservation      
                
 
                 
     
      

  
   
           


   
Template Sequence  LRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGK
Template Known Secondary structure 



SSTT
SSSSSS


B

TTTTS



TTSSSS
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   773......780.........790.........800.........810.........820.........830.........840.........850..
 
   160.........170.........180.........190........
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Query Sequence  KQQERRQQQSISENEKLQKLKERVEAQENKLKKIRAMRG
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Template Sequence  YSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRR
Template Known Secondary structure 
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TTS
TT
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   853......860.........870.........880.........890.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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