Return to main results Retrieve Phyre Job Id

Job DescriptionQ96KQ4
Confidence99.05%DateWed Jun 6 09:44:33 BST 2012
Rank221Aligned Residues167
% Identity23%Templatec3ui2A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic; PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43
Resolution3.18 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   890.........900.........910.........920.........930.........940.........950 .........960........
Predicted Secondary structure 






























.












Query SS confidence 




























































.

















Query Sequence  ALLLDASLEGEFDLVQRIIYEVEDPSKPNDEGITPLHNAVCAGHHHIVKFLLDFGVNVNAA. DSDGWTPLHCAASCNSVH
Query Conservation    
  
   
    
          
     
 
 

 
   
   
   
   
      .
  
 

 
 
       
Alig confidence 


















.








































.

















Template Conservation 


  

  
    
  

.   


  
  
 
 

 
   
       

               
 
  

      
Template Sequence  TPWWTAARKADEQALSQLL. EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE
Template Known Secondary structure  TTT
TT.TT

TT
B
TTS
BT
TT

TT


SSS


TT
Template Predicted Secondary structure 


.

































Template SS confidence 















































































   130.........140........ .150.........160.........170.........180.........190.........200........
 
   969970.........980.........990.........1000.........1010.........1020.........1030.........1040... ..
Predicted Secondary structure 






























































...
Query SS confidence 










































































. . .

Query Sequence  LCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGVAYALWDYEAQNSDELSFHEG. . . DA
Query Conservation          
                                                
   
 
   


 
  
...
 
Alig confidence 
















.





































..
















...

Template Conservation   
  

  


    
 . 
 


  
                    
      
 ..                
     
Template Sequence  VVEALVELGADIEVEDE. RGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE. . GQVFEYAEVDEIVEKRGKGKDV
Template Known Secondary structure  TT

TT


T.T


TT


SS..




S
TTS
Template Predicted Secondary structure 









.







..








Template SS confidence 















































































   209210.........220..... ....230.........240.........250.........260... ......270.........280.....
 
   1046...1050.........1060
Predicted Secondary structure 








Query SS confidence 














Query Sequence  LTILRRKDESETEWW
Query Conservation 
 
    
     

Alig confidence 














Template Conservation    
    
   
   
Template Sequence  EYLVRWKDGGDCEWV
Template Known Secondary structure  SSSS
Template Predicted Secondary structure 






Template SS confidence 














   286...290.........300
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions