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Job DescriptionQ96KQ4
Confidence97.23%DateWed Jun 6 09:44:33 BST 2012
Rank284Aligned Residues289
% Identity7%Templatec2oevA_
PDB info PDB header:protein transportChain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70... ......80.........90........
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Query Sequence  ETTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRR. . . . . . EEVKFFLRHEDSPTENSEQGGRQTQ
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Template Conservation   

      

     
   
  
 
           
   
            
  
   
  
          
 
  
Template Sequence  DLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESL
Template Known Secondary structure  TTTTTTTS
SSTTS

TTTT
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   376...380.........390.........400.........410.........420.........430.........440.........450.....
 
   99100.........110.........120.........130.........140.........150.........160.........170......
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Query Sequence  EQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKL. .
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Template Conservation    
         
                   
          
         
                          
Template Sequence  RLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIP
Template Known Secondary structure  TTSSSS

S

SSTTTS
S
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   456...460.........470.........480.........490.........500.........510.........520.........530.....
 
   177..180.........190.........200.........210.........220.........230.........240..
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Query Sequence  . . . . . . . . . . . . . . QKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQL
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Template Conservation                            
  
   
   
                             

      
   
Template Sequence  SANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKV
Template Known Secondary structure 




SS
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SSS

T
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   536...540.........550.........560.........570.........580.........590.........600.........610.....
 
   243......250.........260..... ....270.........280.........290.........300.........310...
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Query Sequence  EDLKKGKLNGFQSYNGKLTGPAA. . . . . . . . VELKRLYQELQIRNQLNQEQNSKLQQQKELLNKRNMEVAMMDKRISEL
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Template Conservation           
   
      
  
          
     
        

   
 
       
   
  

  
 

Template Sequence  QESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNELTEILVRFQNKCSDI
Template Known Secondary structure  S

SS
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   616...620.........630.........640.........650.........660.........670.........680.........690....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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