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Job Description | Q96KQ4 | Confidence | 73.69% | Date | Wed Jun 6 09:44:33 BST 2012 |
Rank | 338 | Aligned Residues | 150 |
% Identity | 12% | Template | c2v71A_ |
PDB info |
PDB header:nuclear protein | Chain: A: PDB Molecule:nuclear distribution protein nude-like 1; |
PDBTitle: coiled-coil region of nudel
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Resolution | 2.24 Å |
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123 | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | |
. | . | . | . | 200 | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
R | V | E | L | T | L | S | E | L | Q | D | M | A | A | R | Q | Q | Q | Q | I | E | N | Q | Q | Q | M | L | V | A | K | E | Q | R | L | H | F | L | K | Q | Q | E | R | R | Q | Q | Q | S | I | S | E | N | E | K | L | Q | K | L | K | E | R | V | E | A | Q | E | N | K | L | K | K | I | R | A | . |
M | R | G | Q | V | D |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
S | L | K | E | E | T | A | Y | W | K | E | L | S | X | K | Y | K | Q | S | F | Q | E | A | R | D | E | L | V | E | F | Q | E | G | S | R | E | L | E | A | E | L | E | A | Q | L | V | Q | A | E | Q | R | N | R | . |
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D | L | Q | A | D | N | Q | R | L | K | Y | E | V | E | A | L | K | E | K | L | E | H | Q | Y | A |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | |
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. | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
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202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
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Query Sequence |   |
Y | S | K | I | M | N | G | N | L | S | A | E | I | E | R | F | S | A | M | F | Q | E | K | K | Q | E | V | Q | T | A | I | L | R | V | D | Q | L | S | Q | Q | L | E | D | L | K | K | G | K | L | N | G | F | Q | S | Y | N | G | K | L | T | G | P | A | A | V | E | L | K | R | L | Y | Q | E |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Q | S | Y | K | Q | V | S | V | L | E | D | D | L | S | Q | T | R | A | I | K | E | Q | L | H | K | Y | V | R | E | L | E | Q | A | N | D | D | L | E | R | A | K | R | A | T | I | X | S | L | E | D | F | E | Q | R | L | N | Q | A | I | E | R | N | A | F | L | E | S | E | L | D | E | K | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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  |   |
89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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