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Job DescriptionQ96KQ4
Confidence98.74%DateWed Jun 6 09:44:33 BST 2012
Rank249Aligned Residues97
% Identity26%Templatec1oy3D_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   884.....890.........900.........910.........920..
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Query Sequence  VRFNPLALLLDASLEGEFDLVQRIIYEVEDPSKPNDEGI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL
Template Known Secondary structure 

TT


TT
TTSGGGG


TTS

T
TT

SS


TTS

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   54.....60.........70.........80.........90.........100.........110.........120.........130...
 
   923.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPLHNA
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Template Conservation                                                                                  
Template Sequence  ACRVRAHTCACVLLQPRPSHPRDADEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA
Template Known Secondary structure  TTTT
SSS

SS






GGGGTT


TTS

TT
T

TT


TTT


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   134.....140.........150.........160.........170.........180.........190.........200.........210...
 
   929930.........940.........950.........960.........970.........980
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Query Sequence  VCAGHHHIVKFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAI
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Template Sequence  VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPE
Template Known Secondary structure  TT
TT

TT


TTS

TSS
TT


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   249250.........260.........270.........280.........290.........300
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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