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Job DescriptionQ96KQ4
Confidence82.26%DateWed Jun 6 09:44:33 BST 2012
Rank328Aligned Residues173
% Identity12%Templatec3l9oA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
Resolution3.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80........
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Query Sequence  TTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRREEVKFFLRHEDSPTE. . . . . . . . . . . . . . . . .
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Template Sequence  QNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGW
Template Known Secondary structure  TT


TTS

TT

TT

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   613......620.........630.........640.........650.........660.........670.........680.........690..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GAVVDFAKRISAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEESICAVIPITLDSIKSIGNLRLYMPKD
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SSSS


STT

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SS
TTTT

SGGGSS

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SS




TT
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   693......700.........710.........720.........730.........740.........750.........760.........770..
 
   8990.........100.........110.........120.........130.........140.........150.........160.......
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Query Sequence  . NSEQGGRQTQEQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQ
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Template Sequence  IRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLH
Template Known Secondary structure  TTS
SS

TT



SS
TT
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   781........790.........800.........810.........820.........830.........840.........850.........860
 
   168.170.........180.........190.........200
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Query Sequence  QSISENEKLQKLKERVEAQENKLKKIRAMRGQV
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Template Sequence  EDMKQLKR. . KISEQAVIQLDDLRRRKRVLRRL
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   861....... .870.........880.........890.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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