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Job DescriptionQ96KQ4
Confidence95.67%DateWed Jun 6 09:44:33 BST 2012
Rank300Aligned Residues265
% Identity9%Templatec1f5nA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.........90.........100.....
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Query Sequence  TTCRDVVEFCKEPGEGSCHLAEVWRGNERPIPFDHMMYEHLQKWGPRREEVKFFLRHEDSPTENSEQGGRQTQEQRTQRN
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Template Sequence  LALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFC
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GGG
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   317..320.........330.........340.........350.........360.........370.........380.........390......
 
   106...110.........120.........130.........140.........150.........160.........170.........180.....
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Query Sequence  VINVPGEKRTENGVGNPRVELTLSELQDMAARQQQQIENQQQMLVAKEQRLHFLKQQERRQQQSISENEKLQKLKERVEA
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Template Sequence  KQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLK. . SKESMTDA
Template Known Secondary structure  TTTTSSTTSS


TT..T
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   397..400.........410.........420.........430.........440.........450.........460...... ...470....
 
   186...190.........200.........210.........220.........230.........240.. .......250.........260....
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Query Sequence  QENKLKKIRAMRGQVDYSKIMNGNLSAEIERFSAMFQEKKQEVQTAILRVDQLSQQL. EDLKKGKLNGFQSYNGKLTGPA
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Template Sequence  ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL
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   475....480.........490.........500.........510.........520.........530.........540.........550....
 
   265....270.........280.........290..
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Query Sequence  AVELKRLYQELQIRNQLNQEQNSKLQQQ
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Template Sequence  QEQEQLLKEGFQKESRIMKNEIQDLQTK
Template Known Secondary structure  T
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   555....560.........570.........580..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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