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Job DescriptionQ96KQ4
Confidence49.54%DateWed Jun 6 09:44:33 BST 2012
Rank367Aligned Residues225
% Identity14%Templatec3acoB_
PDB info PDB header:endocytosisChain: B: PDB Molecule:protein kinase c and casein kinase substrate in PDBTitle: crystal structure of the efc/f-bar domain of human2 pacsin2/syndapin ii (2.7 a)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80.........90.........100.........110.........120.........130.........
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Query Sequence  HMMYEHLQKWGPRREEVKFFLRHEDSPTENSEQGGRQTQEQRTQRNVINVPGEKRTENGVGNPRVELTLSELQDMAARQQ
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Template Sequence  KRTVKRIDDGHRLCSDLXNCLHERARIEKAYAQQLTEWARRWRQLV. . . . . . . . . . EKGPQYGTVEKAWXAFXSEAERVS
Template Known Secondary structure  ..........SS

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   25....30.........40.........50.........60.........70 .........80.........90....
 
   140......... 150.........160.........170.........180.........190.........200.........210........
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Query Sequence  QQIENQQQML. VAKEQRLHFLKQQERRQQQSISENEKLQKLKERVEAQENKLKKIRAMRGQVDYSKIMNGNLSAEIERFS
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Template Sequence  ELHLEVKASLXNDDFEKIKNWQKEAFHKQXXGGF. . . . KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAI
Template Known Secondary structure  T

B
SSSSB....TTTTTT
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   95....100.........110.........120........ .130.........140.........150.........160.........170
 
   219220.........230.........240.........250.........260.........270.........280.........290........
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Query Sequence  AMFQEKKQEVQTAILRVDQLSQQLEDLKKGKLNGFQSYNGKLTGPAAVELKRLYQELQIRNQLNQEQNSKLQQQKELLNK
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Template Sequence  SREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYXENXEQVFEQCQQFEEKRLRFFREVLLE
Template Known Secondary structure  TSSS
SS

TTTTTTTTGGGTTTTTTTT
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   171........180.........190.........200.........210.........220.........230.........240.........250
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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