 |
Job Description | Q96KQ4 | Confidence | 98.38% | Date | Wed Jun 6 09:44:33 BST 2012 |
Rank | 276 | Aligned Residues | 61 |
% Identity | 16% | Template | c2nyjA_ |
PDB info |
PDB header:transport protein | Chain: A: PDB Molecule:transient receptor potential cation channel |
PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
|
Resolution | 3.20 Å |
|
 |
  |   |
918 | . | 920 | . | . | . | . | . | . | . | . | . | 930 | . | . | . | . | . | . | . | . | . | 940 | . | . | . | . | . | . | . | . | . | 950 | . | . | . | . | . | . | . | . | . | 960 | . | . | . | . | . | . | . | . | . | 970 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | D | E | G | I | T | P | L | H | N | A | V | C | A | G | H | H | H | I | V | K | F | L | L | D | F | G | V | N | V | N | A | A | D | S | D | G | W | T | P | L | H | C | A | A | S | C | N | S | V | H | L | C | K | Q | L | V | E | S | G | A |
Query Conservation |   |
  |   |   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |   |
|   |   |
|   |
|
|
|   |
|
|
|   |   |
|   |   |   |
|
|
|   |
|
|   |   |
|   |
Template Sequence |   |
N | T | V | D | N | T | K | F | V | T | S | X | Y | N | E | I | L | I | L | G | A | K | L | H | P | T | L | K | L | E | E | I | T | N | R | K | G | L | T | P | L | A | L | A | A | S | S | G | K | I | G | V | L | A | Y | I | L | Q | R | E | I |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T |
|
| G | G | G |
|
|
| S | S |
|
|
|  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
297 | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|