Job Description A1A5D9 Confidence 98.95% Date Fri May 25 10:16:11 BST 2012 Rank 1 Aligned Residues 442 % Identity 10% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		M	S	S	P	D	G	P	S	F	P	S	G	P	L	S	G	G	A	S	P	S	G	D	.	E	G	F	F	P	F	V	L	E	R	R	D	S	F	L	G	G	G	P	G	P	E	E	P	E	D	L	A	L	Q	L	Q	Q	K	E	K	D	L	L	L	A	A	E	L	G	K	M	L	L	E	R	N	E	E	L	R
Query Conservation																									.
Alig confidence																									.
Template Conservation
Template Sequence		Y	V	N	P	P	R	V	D	V	F	H	G	T	P	P	A	W	S	S	F	G	N	K	T	I	W	G	G	N	E	W	V	D	D	S	P	T	R	S	D	I	E	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R
Template Known Secondary structure		T	S	S															S	G	G	G	G			T	T	S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	L	E	T	L	S	A	Q	H	L	E	R	E	E	R	L	Q	Q	E	N	H	E	L	R	R	G	L	A	A	R	G	A	E	W	E	A	R	A	V	E	L	E	G	D	V	E	A	L	R	A	Q	L	G	E	Q	R	S	E	Q	Q	D	S	G	R	E	R	A	R	A	L	S	E	L	S	E	Q	N	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D	A	A	D	I	T	R	Q	E	F	R	L	L	Q	A	E	L	R	E	Y	G	F	R	T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I	E	Q	A	E	K	R
Template Known Secondary structure														T	T																																														T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	Q	Q	L	A	Q	A	S	Q	T	E	Q	E	L	Q	R	E	L	D	A	L	R	G	Q	C	Q	A	Q	A	L	A	G	A	E	L	R	T	R	L	E	S	L	Q	G	E	N	Q	M	L	Q	S	R	R	Q	D	L	E	A	Q	I	R	G	L	R	E	E	V	E	K	G	E	G	R	L	Q	T	T	H	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L	E	K	N	G	G	A	A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q	T	R	N	D	R	A	I	S	E	A	R	N	K	L	S	S	V	T	E	S	L	N	T	A	R	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.									.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.
Query Sequence		E	L	L	L	L	R	R	E	R	R	E	H	S	L	E	L	E	R	A	R	S	E	A	G	E	A	L	S	A	L	R	R	L	Q	R	R	V	S	E	L	E	E	E	S	R	L	Q	D	.	.	.	.	.	.	.	.	A	D	V	S	A	A	S	L	Q	S	E	L	A	H	S	L	D	D	G	D	Q	G	Q	G
Query Conservation																																																		.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S	T	N	D	S	I	V	V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N
Template Known Secondary structure															S	S									T	T	T	S														S		T	T	T		S																					T	S									T	S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	P	G	D	T	P	T	T	R	S	P	K	T	R	K	A	S	S	P	Q	P	S	P	P	E	E	I	L	E	P	P	K	K	R	T	S	L	S	P	A	E	I	L	E	E	K	E	V	E	V	A	K	L	Q	D	E	I	S	L	Q	Q	A	E	L	Q	S	L	R	E	E	L	Q	R	Q	K	E	L	R
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		D	R	N	P	V	V	T	E	D	V	E	G	D	K	K	I	Y	N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L	D	A	R	N	K	I	T	S	A	E	S	A	V	N	S	A	R	N	N	L	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	E	K	E	N	I	R	N	.	.
Template Known Secondary structure					S			S	S																																																																							.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	E	D	P	G	E	A	L	H	S	A	L	S	D	R	D	E	A	V	N	K	A	L	E	L	S	L	Q	L	N	R	V	S	L	E	R	D	S	L	S	R	E	L	L	R	A	I	R	Q	K	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D	A	I	N	F	T	T	E	F	L	K	S	V	S	E	K	Y	G	A	K	A	E	Q	L	A	R	E	M	A	G
Template Known Secondary structure																																											T
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480