Job Description O00459 Confidence 38.03% Date Fri May 25 09:44:30 BST 2012 Rank 390 Aligned Residues 158 % Identity 7% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	Y	Q	Q	D	Q	I	V	K	E	D	S	V	E	A	V	G	A	Q	L	K	V	Y	H	Q	Q	Y	Q	D	K	S	R	E	Y	D	Q	L	Y	E	E	Y	T	R	T	S	Q	E	L	Q	M	K	R	T	A	I	E	A	F	N	E	T	I	K	I	F	E	E	Q	G	Q	T	Q	E	K	C	S	K	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Y	I	D	S	P	V	N	L	L	K	P	F	N	P	T	L	P	E	G	I	R	P	A	E	E	S	I	C	A	V	I	P	I	T	L	D	S	I	K	S	I	G	N	L	R	L	Y	M	P	K	D	I	R	A	S	G	Q	K	E	T	V	G	K	S	L	R	E	V	N	R	R	F	P	D	G	I	P	V	L
Template Known Secondary structure				S				S	S		T	T	T	T			S	G	G	G	S	S			S												S	S														T	T	T	T	S																			S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		726	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	F	R	R	E	G	N	E	K	E	M	Q	R	I	L	L	N	S	E	R	L	K	S	R	I	A	E	I	H	E	S	R	T	K	L	E	Q	Q	L	R	A	Q	A	S	D	N	R	E	I	D	K	R	M	N	S	L	K	P	D	L	M	Q	L	R	K	I	R	D	Q	Y	L	V	W	L	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	P	V	K	N	M	K	I	E	D	E	D	F	L	K	L	M	K	K	I	D	V	L	N	T	K	L	S	S	N	P	L	T	N	S	M	R	L	E	E	L	Y	G	K	Y	S	R	K	H	D	L	H	E	D	M	K	Q	L	K	R	K	I	S	E	Q	A	V	I	Q	L	D	D	L	R	R	R	K	R
Template Known Secondary structure																															S	S		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		809	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions