Job Description O00459 Confidence 99.97% Date Fri May 25 09:44:30 BST 2012 Rank 22 Aligned Residues 177 % Identity 19% Template c3fk2B_ PDB info PDB header:signaling protein, hydrolase activator Chain: B: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the rhogap domain of human2 glucocorticoid receptor dna-binding factor 1 Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		A	P	E	P	G	L	T	L	P	D	L	P	E	Q	F	S	P	P	D	V	A	P	P	L	L	V	K	L	V	E	A	I	E	R	T	G	L	D	S	E	S	H	Y	R	P	E	L	P	A	P	R	T	D	W	.	.	.	.	.	.	.	.	.	.	S	L	S	D	V	D	Q	W	D	T	A	A	L	A	D	G
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.
Template Sequence		S	N	Y	F	G	V	P	L	T	T	V	V	T	P	.	.	.	E	K	P	I	P	I	F	I	E	R	C	I	E	Y	I	E	A	T	G	L	S	T	E	G	I	Y	R	V	S	G	N	K	S	E	M	E	S	L	Q	R	Q	F	D	Q	D	H	N	L	D	L	A	E	K	D	F	T	V	N	T	V	A	G	A
Template Known Secondary structure			S	S	T	T	S		G	G	G	G			S	.	.	.	S	S		S																T	T	S	T	T	T	T	T	S																		T	T			S	G	G	G	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		1244	.	.	.	.	.	1250	.	.	.	.	.	.	.				.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		I	K	S	F	L	L	A	L	P	A	P	L	V	T	P	E	A	S	A	E	A	R	R	A	L	.	.	.	R	E	A	A	G	P	V	G	P	A	L	E	P	P	T	L	P	L	H	R	A	L	T	L	R	F	L	L	Q	H	L	G	R	V	A	S	R	A	P	A	L	G	P	A	V	R	A	L	G	A	T	F
Query Conservation																											.	.	.
Alig confidence																											.	.	.
Template Conservation
Template Sequence		M	K	S	F	F	S	E	L	P	D	P	L	V	P	Y	N	M	Q	I	D	L	V	E	A	H	K	I	N	D	R	E	Q	K	L	H	A	L	K	E	V	L	K	K	F	P	K	E	N	H	E	V	F	K	Y	V	I	S	H	L	N	K	V	S	H	N	N	K	V	N	L	M	T	S	E	N	L	S	I	C	F
Template Known Secondary structure									S	S	S		S	S												T	T			S														T	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		1321	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	L	L	R	A	P	P	P	P	S	S	P	P	P	G	G	A	P	D	G	S	E	P	S	P	D	F	P	A	L	L	V	E	K	L	L	Q	E	H
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.
Template Sequence		W	P	T	L	M	R	P	D	.	.	.	.	.	.	.	.	M	D	A	L	T	A	T	R	T	Y	Q	T	I	I	E	L	F	I	Q	Q	C	P	F	F	F
Template Known Secondary structure										.	.	.	.	.	.	.	.																				T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.
Template SS confidence
		1401	.	.	.	.	.	.	.									.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions