Job Description O00459 Confidence 99.96% Date Fri May 25 09:44:30 BST 2012 Rank 26 Aligned Residues 180 % Identity 27% Template c2ovjA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rac gtpase-activating protein 1; PDBTitle: the crystal structure of the human rac gtpase activating protein 12 (racgap1) mgcracgap. Resolution 1.49 Å

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		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	P	D	L	P	E	Q	F	S	P	P	D	V	A	P	P	L	L	V	K	L	V	E	A	I	E	R	T	G	L	D	S	E	S	H	Y	R	P	E	L	P	A	P	R	T	D	W	.	.	.	.	.	.	.	.	.	.	S	L	S	D	V	D	Q	W	D	T	A	A	L	A	D	G	I	K	S	F	L
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		G	M	L	A	D	F	V	S	Q	T	.	.	S	P	M	I	P	S	I	V	V	H	C	V	N	E	I	E	Q	R	G	L	T	E	T	G	L	Y	R	I	S	G	C	D	R	T	V	K	E	L	K	E	K	F	L	R	V	K	T	V	P	L	L	S	K	V	D	D	I	H	A	I	C	S	L	L	K	D	F	L
Template Known Secondary structure				G	G	G	G			S	S	.	.	S	S																	T	T	T	S	T	T	T	T	T	S																T	T		S				G	G	G
Template Predicted Secondary structure												.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		179	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		L	A	L	P	A	P	L	V	T	.	.	.	P	E	A	S	A	E	A	R	R	A	L	R	E	A	A	G	P	V	G	P	A	L	E	P	P	T	L	P	L	H	R	A	L	T	L	R	F	L	L	Q	H	L	G	R	V	A	S	R	A	P	A	L	G	P	A	V	R	A	L	G	A	T	F	G	P	L	L	L
Query Conservation											.	.	.
Alig confidence											.	.	.																																																.
Template Conservation																																																													.
Template Sequence		R	N	L	K	E	P	L	L	T	F	R	L	N	R	A	F	M	E	A	A	E	I	T	D	E	D	N	S	I	A	A	M	Y	Q	A	V	G	E	L	P	Q	A	N	R	D	T	L	A	F	L	M	I	H	L	Q	R	V	A	Q	.	S	P	H	T	K	M	D	V	A	N	L	A	K	V	F	G	P	T	I	V
Template Known Secondary structure			T	S	S	S		T	T		T	T	T											S	S														T	S																					.		T	T	S																T
Template Predicted Secondary structure																																																													.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	P	P	P	P	S	S	P	P	P	G	G	A	P	D	G	S	E	P	S	P	D	F	P	A	L	L	V	E	K	L	L	Q	E	H	L	E
Query Conservation
Alig confidence											.	.
Template Conservation											.	.
Template Sequence		A	H	A	V	P	N	P	D	P	.	.	V	T	M	L	Q	D	I	K	R	Q	P	K	V	V	E	R	L	L	S	L	P	L	E	Y	W	S	Q
Template Known Secondary structure				S	S	S	S				.	.																				S							G
Template Predicted Secondary structure											.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.			.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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