26/05/2012 12:50:30 : INFO  : Run start: Sat May 26 12:50:30 BST 2012
26/05/2012 12:50:30 : INFO  : Initialised job
26/05/2012 12:50:30 : INFO  : Initialised job:
Sequence
>batch____
MAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGL
NERTRQRGDFPGTYVEFLGPVALARPGPRPRGPRPLPARPRDGAPEPGLTLPDLPEQFSP
PDVAPPLLVKLVEAIERTGLDSESHYRPELPAPRTDWSLSDVDQWDTAALADGIKSFLLA
LPAPLVTPEASAEARRALREAAGPVGPALEPPTLPLHRALTLRFLLQHLGRVASRAPALG
PAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLEEQEVAPP
ALPPKPPKAKPASTVLANGGSPPSLQDAEWYWGDISREEVNEKLRDTPDGTFLVRDASSK
IQGEYTLTLRKGGNNKLIKVFHRDGHYGFSEPLTFCSVVDLINHYRHESLAQYNAKLDTR
LLYPVSKYQQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTA
IEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRT
KLEQQLRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEWLGIKNE
TEDQYALMEDEDDLPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQRGCYACSVV
VDGDTKHCVIYRTATGFGFAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVRAPG
PGPPPAAR

26/05/2012 12:50:30 : INFO  : Checked sequence
26/05/2012 12:50:30 : INFO  : Finding homologues with PSI-BLAST
26/05/2012 12:50:30 : INFO  : PSI-BLAST 3 iterations
26/05/2012 12:53:38 : INFO  : PSI-BLAST 5 iterations
26/05/2012 12:57:04 : INFO  : Finished PSI-BLAST
26/05/2012 12:57:04 : INFO  : Running Buildali to generate a3m file
26/05/2012 13:10:12 : INFO  : Converting to HMM
26/05/2012 13:10:13 : INFO  : Calibrating HMM
26/05/2012 13:10:28 : INFO  : Searching HMM database
26/05/2012 13:22:10 : INFO  : Finished buildali
26/05/2012 13:22:10 : INFO  : Predicting secondary structure
26/05/2012 13:22:10 : INFO  : Predicted secondary structure (PSI-Pred)
26/05/2012 13:22:10 : INFO  : Predicting Disordered regions
26/05/2012 13:22:10 : INFO  : Predicted Disorder (Disopred)
26/05/2012 13:22:10 : INFO  : Running memsat_svm check
26/05/2012 13:24:30 : INFO  : Running memsat_svm full
26/05/2012 13:30:25 : INFO  : Predicted Transmembrane (memsat_svm) ID '0ae9a79684a9af6d'
26/05/2012 13:30:25 : INFO  : Initialising fold library search
26/05/2012 13:30:25 : INFO  : Initialised search input
26/05/2012 13:30:25 : INFO  : Building Ensemble models
26/05/2012 13:30:25 : INFO  : Building hh.c2y3aB_.model.1.pdb
26/05/2012 13:30:25 : INFO  : Building hh.c2oq1A_.model.2.pdb
26/05/2012 13:30:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/hh.c2oq1A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/c2oq1A_.1.pdb
26/05/2012 13:30:26 : INFO  : Building hh.c1xa6A_.model.3.pdb
26/05/2012 13:30:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/hh.c1xa6A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/c1xa6A_.8.pdb
26/05/2012 13:30:26 : INFO  : Building hh.c2ee5A_.model.4.pdb
26/05/2012 13:30:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/hh.c2ee5A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/c2ee5A_.11.pdb
26/05/2012 13:30:26 : INFO  : Building hh.c2xs6A_.model.5.pdb
26/05/2012 13:30:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/hh.c2xs6A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/c2xs6A_.12.pdb
26/05/2012 13:30:27 : INFO  : Building hh.c2kt1A_.model.6.pdb
26/05/2012 13:30:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/hh.c2kt1A_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ae9a79684a9af6d/c2kt1A_.119.pdb
26/05/2012 13:30:27 : INFO  : Building c2oq1A_.1.pdb
26/05/2012 13:30:27 : INFO  : Building c2ozoA_.2.pdb
26/05/2012 13:30:28 : INFO  : Building c2y3aB_.3.pdb
26/05/2012 13:30:28 : INFO  : Building c2b3oA_.4.pdb
26/05/2012 13:30:28 : INFO  : Building c2shpA_.5.pdb
26/05/2012 13:30:29 : INFO  : Building c1a81E_.6.pdb
26/05/2012 13:30:29 : INFO  : Building c3ps5A_.7.pdb
26/05/2012 13:30:29 : INFO  : Building c1xa6A_.8.pdb
26/05/2012 13:30:30 : INFO  : Building c3gqiB_.9.pdb
26/05/2012 13:30:30 : INFO  : Building c3hizB_.10.pdb
26/05/2012 13:30:31 : INFO  : Building c2ee5A_.11.pdb
26/05/2012 13:30:31 : INFO  : Building c2xs6A_.12.pdb
26/05/2012 13:30:31 : INFO  : Building c3byiA_.13.pdb
26/05/2012 13:30:31 : INFO  : Building c2ngrB_.14.pdb
26/05/2012 13:30:32 : INFO  : Building c3qisA_.15.pdb
26/05/2012 13:30:32 : INFO  : Building d1xa6a1.16.pdb
26/05/2012 13:30:33 : INFO  : Building d1tx4a_.17.pdb
26/05/2012 13:30:33 : INFO  : Building c3msxB_.18.pdb
26/05/2012 13:30:33 : INFO  : Building c3kuqA_.19.pdb
26/05/2012 13:30:33 : INFO  : Building c3iugA_.20.pdb
26/05/2012 13:30:41 : INFO  : Finished HH model building
26/05/2012 13:30:41 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
26/05/2012 13:30:46 : INFO  : html domain output complete ID '0ae9a79684a9af6d'
26/05/2012 14:09:29 : INFO  : Run end  : Sat May 26 14:09:29 BST 2012
