Phyre 2 alignment of O00459 with c3dedB_

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Job Description | O00459
Confidence | 24.03% | Date | Fri May 25 09:44:30 BST 2012
Rank | 412 | Aligned Residues | 42
% Identity | 10% | Template | c3dedB_
PDB info | PDB header:membrane protein | Chain: B: PDB Molecule:probable hemolysin; | PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
Resolution | 2.14 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 143 | . | . | . | . | . | . | 150 |  | . | . | . | . | . | . | . | . | . | 160 | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | S | H | Y | R | P | E | L | . | P | A | P | R | T | D | W | S | L | S | D | V | D | . | . | . | . | . | . | . | Q | W | D | T | A | A | L | A | D | G | I | K | S | F | L | L | A | L | P | A | P
Query Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | G | S | W | L | V | D | G | X | V | S | L | D | R | F | R | E | F | F | E | L | E | A | P | L | P | G | E | A | G | G | N | I | H | T | L | A | G | V | X | L | Y | Q | L | G | R | V | P | S | V
Template Known Secondary structure |  | T | S |  |  |  |  |  | T | T |  | B |  |  |  |  |  |  |  |  | T |  |  | S |  |  | T | T | G | G | G | S |  |  |  | B |  |  |  |  |  |  |  |  |  |  | S | S |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 348 | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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