Phyre 2 alignment of O00459 with d1q88a_

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Job Description | O00459
Confidence | 31.94% | Date | Fri May 25 09:44:30 BST 2012
Rank | 399 | Aligned Residues | 39
% Identity | 8% | Template | d1q88a_
SCOP info | 39 kda initiator binding protein, IBP39, C-terminal domains | 39 kda initiator binding protein, IBP39, C-terminal domains | 39 kda initiator binding protein, IBP39, C-terminal domains
Resolution | 2.42

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 656 | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . |  |  |  | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | C | S | V | V | V | D | G | D | T | K | H | C | V | I | Y | . | . | . | R | T | A | T | G | F | G | F | A | E | P | Y | N | L | Y | G | S | L | K | E | L | V | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | L | I | L | K | T | P | T | G | I | R | K | I | W | N | K | P | L | I | E | A | T | G | Q | Y | L | M | D | E | N | G | E | K | Y | D | S | W | D | K | Y | F | E
Template Known Secondary structure |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | T | S |  | T | T | S |  |  |  |  |  | T | T |  |  |  |  | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 283 | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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