Job Description A1A4Y4 Confidence 98.65% Date Wed Jun 6 09:17:58 BST 2012 Rank 237 Aligned Residues 133 % Identity 14% Template c3tw8B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:ras-related protein rab-35; PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	T	L	E	N	Y	L	M	E	M	Q	F
Query Conservation
Alig confidence																											.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		D	H	L	F	K	L	L	I	I	G	D	S	G	V	G	K	S	S	L	L	L	R	F	A	D	.	.	.	.	.	N	T	S	Y	I	T	T	I	G	V	D	F	K	I	R	T	V	E	I	N	G	E	K	V	K	L	Q	I	W	D	T	A	G	Q	E	R	F	R	T	I	T	S	T	Y	Y	R	G	T	H	G
Template Known Secondary structure													T	T	S											S	.	.	.	.	.					T	T	T	T	S											T	T											T	T	G	G	G		S	S			G	G	G	G	T	T		S
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		N	R	Y	D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	G	.	K	K	F	Y	I	V	W	T	K	L	D	M	D	L	S	T	G	A	L	P	E	V	Q	L	L	Q	I	R	E	N
Query Conservation																														.
Alig confidence																														.
Template Conservation
Template Sequence		V	I	V	V	Y	D	V	T	S	A	E	S	F	V	N	V	K	R	W	L	H	E	I	N	Q	N	C	D	D	V	C	R	I	L	V	G	N	K	N	D	D	P	E	R	K	V	V	E	T	E	D	A	Y	K	F	A	G	Q	M
Template Known Secondary structure								T	T																				T	T	S									T	T		G	G	G			S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions