Job Description A1A4Y4 Confidence 99.73% Date Wed Jun 6 09:17:58 BST 2012 Rank 50 Aligned Residues 140 % Identity 15% Template c3r7wC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:gtp-binding protein gtr1; PDBTitle: crystal structure of gtr1p-gtr2p complex Resolution 2.77 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.
Predicted Secondary structure																																																							.	.													.	.	.	.	.
Query SS confidence																																																							.	.													.	.	.	.	.
Query Sequence		P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H	F	S	N	.	.	V	V	L	W	D	L	P	G	T	G	S	A	.	.	.	.	.	T	T	T	L	E	N	Y	L
Query Conservation																																																							.	.													.	.	.	.	.
Alig confidence																																	.	.	.	.																			.	.													.	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		G	S	K	L	L	L	X	G	R	S	G	S	G	K	S	S	X	R	S	I	I	F	S	N	Y	S	A	F	D	T	R	.	.	.	.	R	L	G	A	T	I	D	V	E	H	S	H	L	R	F	L	G	N	X	T	L	N	L	W	D	C	G	G	Q	D	V	F	X	E	N	Y	F	T	K	Q	K	D	H	I	F
Template Known Secondary structure											T	T	S											S				T	T	G	G	G	.	.	.	.	G						S									T	T	T											S									T	T	T
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.					.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.
Query Sequence		M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	.	.	.	.	.	.	G	K	K	F	Y	I	V	W	T	K	L	D	M	D	L	S	T	G	A	L	P	E	V	Q	L	L	Q	I	R	E	N	V	L	E	N	L	Q	K	E	R	V	C
Query Conservation																																		.	.	.	.	.	.
Alig confidence		.	.																															.	.	.	.	.	.															.	.
Template Conservation		.	.																																																			.	.
Template Sequence		.	.	Q	X	V	Q	V	L	I	H	V	F	D	V	E	S	T	E	V	L	K	D	I	E	I	F	A	K	A	L	K	Q	L	R	K	Y	S	P	D	A	K	I	F	V	L	L	H	K	X	D	L	V	.	.	Q	L	D	K	R	E	E	L	F	Q	I	X	X	K	N	L	S	E	T	S	S	E	F	G	F	P
Template Known Secondary structure		.	.	T	T										T	T		T	T																				T	T										T	T	S	S	.	.																						T	T	T
Template Predicted Secondary structure		.	.																																																			.	.
Template SS confidence
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		180
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		158

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions