Job Description A1A4Y4 Confidence 99.67% Date Wed Jun 6 09:17:58 BST 2012 Rank 67 Aligned Residues 142 % Identity 17% Template c3p27A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: crystal structure of s. cerevisiae hbs1 protein (gdp-bound form), a2 translational gtpase involved in rna quality control pathways and3 interacting with dom34/pelota Resolution 2.95 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.
Query Sequence		E	T	L	K	I	V	S	R	T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	.	.	.	.	.	.	.	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S
Query Conservation																																															.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.																											.	.
Template Conservation																																																																																.	.
Template Sequence		S	A	F	V	K	S	A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	X	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	W	I	X	D	Q	T	V	T	V	S	I	C	T	S	H	F	S	T	H	R	A	N	F	T	I	V	D	A	P	G	V	.	.
Template Known Secondary structure								S												T	T	S	S												T	T	S	S		T	T																										S	S												.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																												.																			.
Query SS confidence																												.																			.
Query Sequence		A	T	T	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	Q	.	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	G	K	K	.	F	Y	I	V	W	T	K	L	D	M	D	L	S	T	G	A	L	P	E	V	Q	L	L	Q	I	R	E	N	V	L	E
Query Conservation																												.																			.
Alig confidence		.	.	.	.																							.																			.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	P	N	A	I	X	G	I	S	Q	A	D	X	A	I	L	C	V	D	C	S	T	F	D	L	D	G	Q	T	K	E	H	X	L	L	A	S	S	L	G	I	H	N	L	I	I	A	X	N	K	X	D	N	V	D	W	S	Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D
Template Known Secondary structure		.	.	.	.											S																											T	T											G	G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions