Job Description A1A4Y4 Confidence 99.62% Date Wed Jun 6 09:17:58 BST 2012 Rank 71 Aligned Residues 140 % Identity 19% Template c3izq1_ PDB info PDB header:ribosomal protein,hydrolase Chain: 1: PDB Molecule:elongation factor 1 alpha-like protein; PDBTitle: structure of the dom34-hbs1-gdpnp complex bound to a translating2 ribosome Resolution 9.50 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	.	.	.	.	.	.	.	.	.	.	.	.	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	P	H	L	S	F	V	V	L	G	H	V	D	A	G	K	S	T	L	M	G	R	L	L	Y	D	L	N	I	V	N	Q	S	Q	L	R	K	L	Q	R	E	S	E	T	M	G	K	S	S	F	K	F	A	W	I	M	D	Q	T	N	E	E	R	E	R	G	V	T	V	S	I	C	T	S	H	F	S	T	H
Template Known Secondary structure														S	S	S											S		S	S		S												S	S		S	S	S	S			S	S	S												T	T	T			S		S							S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.																			.
Query SS confidence																																										.	.	.	.	.	.	.																			.
Query Sequence		F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	Q	.	.	.	.	.	.	.	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	G	K	K	.	F	Y	I	V	W	T	K	L	D	M	D	L	S	T
Query Conservation																																										.	.	.	.	.	.	.																			.
Alig confidence																.	.																									.	.	.	.	.	.	.																			.
Template Conservation																.	.
Template Sequence		R	A	N	F	T	I	V	D	A	P	G	H	R	D	.	.	F	V	P	N	A	I	M	G	I	S	Q	A	D	M	A	I	L	C	V	D	C	S	T	N	A	F	E	S	G	F	D	L	D	G	Q	T	K	E	H	M	L	L	A	S	S	L	G	I	H	N	L	I	I	A	M	N	K	M	D	N	V	D	W	S
Template Known Secondary structure		S										S	S	S		.	.						T	T	T	S	S			S									S						T	T			T	T	S											T	T	T											T	T	T	T	T	T
Template Predicted Secondary structure																.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	L	P	E	V	Q	L	L	Q	I	R	E	N	V	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Q	R	F	E	E	I	K	S	K	L	L	P	Y	L	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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