Job Description A1A4Y4 Confidence 98.58% Date Wed Jun 6 09:17:58 BST 2012 Rank 243 Aligned Residues 128 % Identity 13% Template c3cphA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:ras-related protein sec4; PDBTitle: crystal structure of sec4 in complex with rab-gdi Resolution 2.90 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y
Query Conservation
Alig confidence																																.	.	.
Template Conservation																																.	.	.
Template Sequence		M	K	I	L	L	I	G	D	S	G	V	G	K	S	C	L	L	V	R	F	V	E	D	K	F	N	P	S	F	I	.	.	.	T	T	I	G	I	D	F	K	I	K	T	V	D	I	N	G	K	K	V	K	L	Q	L	W	D	T	A	G	Q	E	R	F	R	T	I	T	T	A	Y	Y	R	G	A	M	G	I	I
Template Known Secondary structure									S	T	T	S	S																S	S	S	.	.	.				S											T	T											T	T	G	G	G	G	T								T	T		S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50				.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	.	.	.	M	G	K	K	F	Y	I	V	W	T	K	L	D	M	D	L	S	T	G	A	L	P	E	V	Q	L	L	Q
Query Conservation																									.	.	.
Alig confidence																									.	.	.
Template Conservation
Template Sequence		L	V	Y	D	V	T	D	E	R	T	F	T	N	I	K	Q	W	F	K	T	V	N	E	H	A	N	D	E	A	Q	L	L	L	V	G	N	K	S	D	M	E	T	R	V	V	T	A	D	Q	G	E	A	L	A
Template Known Secondary structure						T	T							T												T	T	T		S									T	T		S	S			S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions