Job Description A1A4Y4 Confidence 98.74% Date Wed Jun 6 09:17:58 BST 2012 Rank 217 Aligned Residues 134 % Identity 13% Template c2hxsA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:ras-related protein rab-28; PDBTitle: crystal structure of rab28a gtpase in the inactive (gdp-3'p-2 bound) form Resolution 1.10 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A	S	Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	T	L	E	N	Y	L	M	E	M	Q	F	N
Query Conservation
Alig confidence																																		.	.	.
Template Conservation																																		.	.	.
Template Sequence		R	Q	L	K	I	V	V	L	G	D	G	A	S	G	K	T	S	L	T	T	C	F	A	Q	E	T	F	G	K	Q	Y	K	.	.	.	Q	T	I	G	L	D	F	F	L	R	R	I	T	L	P	G	N	L	N	V	T	L	Q	I	W	D	I	G	G	Q	T	I	G	G	K	M	L	D	K	Y	I	Y	G	A	Q
Template Known Secondary structure												T	T	S	S										G	G	G	T	T					.	.	.		T	T	T	S	S									T	T	T											T	T			T	T		T	T						T	T		S
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.				.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.
Query Sequence		R	Y	D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	.	.	.	.	.	.	.	M	G	K	K	F	Y	I	V	W	T	K	L	D	M	D	L	S	T	G	A	L	P	E	V	Q	L	L	Q	I	R	E	N
Query Conservation																											.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	L	L	V	Y	D	I	T	N	Y	Q	S	F	E	N	L	E	D	W	Y	T	V	V	K	K	V	S	E	E	S	E	T	Q	P	L	V	A	L	V	G	N	K	I	D	L	E	H	M	R	T	I	K	P	E	K	H	L	R	F	C	Q	E	N
Template Known Secondary structure									T	T							T																T												G	G	G	G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions