Job Description A1A4Y4 Confidence 99.84% Date Wed Jun 6 09:17:58 BST 2012 Rank 5 Aligned Residues 168 % Identity 15% Template c1xzqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable trna modification gtpase trme; PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30						.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		E	A	M	N	V	E	K	A	S	A	D	G	N	L	P	E	V	I	S	N	I	K	E	T	L	K	I	V	S	.	.	.	.	.	R	T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.																													.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		D	E	I	E	T	N	T	G	E	V	V	T	R	L	E	R	I	K	E	K	L	T	E	E	L	K	K	A	D	A	G	I	L	L	N	R	G	L	R	M	V	I	V	G	K	P	N	V	G	K	S	T	L	L	N	R	L	L	N	E	D	R	.	.	.	.	A	I	V	T	D	I	P	G	T	T	R	D	V	I
Template Known Secondary structure		S	S																									S																			T	T	G	G	G	S										T	B	.	.	.	.										S			S
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250
			77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																							.	.	.	.	.	.	.
Query SS confidence		.																							.	.	.	.	.	.	.
Query Sequence		.	S	Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	.	.	.	.	.	.	.	T	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	G	K	K	F	Y	I	V	W	T	K	L
Query Conservation		.																							.	.	.	.	.	.	.
Alig confidence		.																							.	.	.	.	.	.	.																																					.	.
Template Conservation																																																																				.	.
Template Sequence		S	E	E	I	V	I	R	G	I	L	F	R	I	V	D	T	A	G	V	R	S	E	T	N	D	L	V	E	R	L	G	I	E	R	T	L	Q	E	I	E	K	A	D	I	V	L	F	V	L	D	A	S	S	P	L	D	E	E	D	R	K	I	L	E	R	I	.	.	K	N	K	R	Y	L	V	V	I	N	K	V
Template Known Secondary structure								T	T								S	S				S	S			S	S																	S								S	S	S													G	.	.	G	G	S	S
Template Predicted Secondary structure																																																																				.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.																			.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	D	L	S	T	G	A	L	P	E	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	Q	I	R	E	N	V	L	E	N	L	Q	K
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	V	E	K	I	N	E	E	E	I	K	N	K	L	G	T	D	R	H	M	V	K	I	S	A	L	K	G	E	G	L	E	K	L	E	E	S	I	Y	R	E	T	Q	E
Template Known Secondary structure		S	S				S									T	S		S	T	T						T	T	T	T														T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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