Job Description A1A4Y4 Confidence 98.08% Date Wed Jun 6 09:17:58 BST 2012 Rank 287 Aligned Residues 112 % Identity 28% Template c1tndA_ PDB info PDB header:binding protein(gtp) Chain: A: PDB Molecule:transducin; PDBTitle: the 2.2 angstroms crystal structure of transducin-alpha complexed with2 gtp gamma s Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.
Template Sequence		R	T	V	K	L	L	L	L	G	A	G	E	S	G	K	S	T	I	V	K	Q	M	K	.	.	.	.	I	I	H	Q	D	G	Y	S	L	E	E	C	L	E	F	I	A	I	I	Y	G	N	T	L	Q	S	I	L	A	I	V	R	A	M	T	T	L	N	I	Q	Y	G	D	S	A	R	Q	D	D	A	R	K	L
Template Known Secondary structure											S	T	T	S	S										.	.	.	.				S																																	T	T				S	S	T	T
Template Predicted Secondary structure																									.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
																																																																								68	.	70	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	K	A	T	Q	R	C	A	S
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	H	M	A	D	T	I	E	E	G	T	M	P	K	E	M	S	D	I	I	Q	R	L	W	K	D	S	G	I	Q	A	C	F	D	R	A	S	E	Y	Q	L	N	D	S	A	G	Y	Y	L	S	D	L	E	R	L	V	T	P	G	Y	V	P	T	E	Q	D	V	L	R	S	R	V	K	T	T	G	I	I	E	T
Template Known Secondary structure					T	T	T	S		T	T																S								T	T	G	G	G	S				T	T						T	T					T	S	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.												.	.	.	.	.	.	.	.	130	.	.	.	.	.	.					.	.	.	140	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		Y	F	S	S	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	.	.	.	.	.	.	.	.	.	.	.	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	.	.	.	.	M	G	K	K	F	Y
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence																															.	.														.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																															.	.
Template Sequence		Q	F	S	F	K	D	L	N	F	R	M	F	D	V	G	G	Q	R	S	E	R	K	K	W	I	H	C	F	E	.	.	G	V	T	C	I	I	F	I	A	A	L	S	A	Y	D	M	V	L	V	E	D	D	E	V	N	R	M	H	E	S	L	H	L	F	N	S	I	C	N	H	R	Y	F	A	T	T	S	I	V
Template Known Secondary structure						T	T											S					G	G	G	G	G	G		T	.	.	T		S								G	G	G	G	G		B		S	S		T	T	S	B														T		S	G	G	G	S
Template Predicted Secondary structure																															.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		143	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	W	T	K	L	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	L	N	K	K	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions