Job Description A1A4Y4 Confidence 98.04% Date Wed Jun 6 09:17:58 BST 2012 Rank 290 Aligned Residues 119 % Identity 17% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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Show / Hide Conservation and Alignment quality

		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	T	P	V	N	I	T	M	A	G	D	S	G	N	G	M	S	T	F	I	S	A	L	R	N	T	G	H	E	G	K	A	S	P	P	T	E	L	V	K	A	T	Q	R	C	A	S	Y	F	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		T	K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	.	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V
Template Known Secondary structure		S	S	S	S								S	S	S	S	S	S	T	T	T					.						T	T	S					B						S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure																										.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
							82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.							100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		.	.	.	.	.	H	F	S	N	V	V	L	W	D	L	P	G	T	G	S	A	T	T	.	.	.	.	.	.	T	L	E	N	Y	L	M	E	M	Q	F	N	R	Y	D	F	I	M	V	A	S	A	Q	F	S	M	N	H	V	M	L	A	K	T	A	E	D	M	G	K	K	F	Y	I	V	W	T	K	L	D	M
Query Conservation		.	.	.	.	.																			.	.	.	.	.	.
Alig confidence		.	.	.	.	.																			.	.	.	.	.	.																								.	.
Template Conservation																																																						.	.
Template Sequence		D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	.	.	Q	K	A	Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D	G
Template Known Secondary structure							T	T		S									S			S	S	T																		S								T	T	T	G	.	.	G	G	G									T	T		S	S								S	S	S
Template Predicted Secondary structure																																																						.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		151
Predicted Secondary structure
Query SS confidence
Query Sequence		D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions