Phyre 2 alignment of A1A4Y4 with c1wb1C_

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Job Description | A1A4Y4
Confidence | 99.81% | Date | Wed Jun 6 09:17:58 BST 2012
Rank | 17 | Aligned Residues | 143
% Identity | 14% | Template | c1wb1C_
PDB info | PDB header:protein synthesis | Chain: C: PDB Molecule:translation elongation factor selb; | PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
Resolution | 3.0 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | I | V | S | R | T | P | V | N | I | T | M | A | G | D | S | G | N | G | M | S | T | F | I | S | A | L | R | N | T | G | H | E | G | . | . | K | A | S | P | P | T | E | L | V | K | A | T | Q | R | C | A | S | Y | . | F | S | S | H | F | S | N | V | V | L | W | D | L | P | G | T | G | S | A | T | T | T | L | E | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | H | M | D | F | K | N | I | N | L | G | I | F | G | H | I | D | H | G | K | T | T | L | S | K | V | L | T | E | I | A | S | T | S | A | H | D | K | L | P | E | S | Q | K | R | G | I | T | I | D | I | G | F | S | A | F | K | L | E | N | Y | R | I | T | L | V | D | A | P | G | H | A | D | L | I | R | A | V | V | S
Template Known Secondary structure |  |  |  |  |  |  | B |  |  |  |  |  |  |  |  |  | T | T | S | S | T | T |  |  |  |  |  |  | T | T | T | S | S |  | S | S |  | S | S | S | S | T | T | T | T | S |  |  |  |  |  | S | S |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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