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Job DescriptionP08631
Confidence100.00%DateThu Apr 26 09:51:20 BST 2012
Rank49Aligned Residues246
% Identity22%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   259260.........270.........280.........290...... ...300.........310.........320.... .....330....
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Query Sequence  RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS. . . MSVEAFLAEANVMKTLQHDKLVKLHAVV. TKEPIYIITE
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVLAGQ. EYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD
Template Known Secondary structure 

TTTT.S
S


BTTB


SS
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   10.........20.........30..... ....40.........50.........60.........70.........80........
 
   335....340.........350.........360.........370.........380.........390.... .....400.........410.
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Query Sequence  FMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLV. . . CKIADFGLARVIEDNEY
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Template Sequence  LVTGGELFEDIVARE. . YYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ
Template Known Secondary structure 

B

B
S..


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SSTTSBSSTT




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B


TT

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   91........100..... ....110.........120.........130.........140.........150.........160........
 
   412.......420.........430.........440.........450.........460.........470..... ....480........
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Query Sequence  TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYR. . . MPRPENCPEELYN
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Template Sequence  AWFGFAGTPG. YLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
Template Known Secondary structure  B


S
S
GG.G

TT

B
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S


SST




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   169170........ .180.........190.........200........ .210.........220.........230.........240......
 
   489490.........500.........
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Query Sequence  IMMRCWKNRPEERPTFEYIQS
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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