Job Description P08631 Confidence 100.00% Date Thu Apr 26 09:51:20 BST 2012 Rank 9 Aligned Residues 326 % Identity 35% Template c2j0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:focal adhesion kinase 1; PDBTitle: crystal structure of a fragment of focal adhesion kinase2 containing the ferm and kinase domains. Resolution 3.0 Å

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		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																																			.																																								.	.	.	.	.	.	.
Query SS confidence																																			.																																								.	.	.	.	.	.	.
Query Sequence		S	L	S	V	R	D	Y	D	P	R	Q	G	D	T	V	K	H	Y	K	I	R	T	L	D	N	G	G	F	Y	I	S	P	R	.	S	T	F	S	T	L	Q	E	L	V	D	H	Y	K	K	G	N	D	G	L	C	Q	K	L	S	V	P	C	M	S	S	K	P	Q	K	P	W	E	K	.	.	.	.	.	.	.
Query Conservation																																			.																																								.	.	.	.	.	.	.
Alig confidence																																			.																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	Q	Y	S	N	S	E	D	K	D	R	K	G	M	L	Q	L	K	I	A	G	A	P	E	P	L	T	V	T	A	P	S	L	T	I	A	E	N	M	A	D	L	I	D	G	Y	C	R	L	V	N	G	A	T	Q	S	F	I	I	R	P	G	V	R	S	H	T	D	D	Y	A	E	I	I	D	E	E	D	T
Template Known Secondary structure									S	S	S	S	S									S	S		S	S							S	S																			T	T			S			B						S															T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
								253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.	.	.	.	.	.																																		.	.	.	.															.	.
Query SS confidence		.	.	.	.	.	.																																		.	.	.	.															.	.
Query Sequence		.	.	.	.	.	.	D	A	W	E	I	P	R	E	S	L	K	L	E	K	K	L	G	A	G	Q	F	G	E	V	W	M	A	T	Y	N	K	H	T	.	.	.	.	K	V	A	V	K	T	M	K	P	G	S	M	S	V	.	.	E	A	F	L	A	E	A	N	V	M	K	T	L	Q	H	D	K	L	V	K	L
Query Conservation		.	.	.	.	.	.																																		.	.	.	.															.	.
Alig confidence		.	.	.	.	.	.																																		.	.	.	.															.	.
Template Conservation
Template Sequence		Y	T	M	P	S	T	R	D	Y	E	I	Q	R	E	R	I	E	L	G	R	C	I	G	E	G	Q	F	G	D	V	H	Q	G	I	Y	M	S	P	E	N	P	A	M	A	V	A	I	K	T	C	K	N	C	T	S	D	S	V	R	E	K	F	L	Q	E	A	L	T	M	R	Q	F	D	H	P	H	I	V	K	L
Template Known Secondary structure		T	S					S	T	T	B			G	G	G											S	S											S	S	S											T	T	T	T	S															T	T				T	T	B
Template Predicted Secondary structure
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	V	V	T	K	E	P	I	Y	I	I	T	E	F	M	A	K	G	S	L	L	D	F	L	K	S	D	E	G	S	K	Q	P	L	P	K	L	I	D	F	S	A	Q	I	A	E	G	M	A	F	I	E	Q	R	N	Y	I	H	R	D	L	R	A	A	N	I	L	V	S	A	S	L	V	C	K	I	A	D	F
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		I	G	V	I	T	E	N	P	V	W	I	I	M	E	L	C	T	L	G	E	L	R	S	F	L	Q	V	.	R	K	F	S	L	D	L	A	S	L	I	L	Y	A	Y	Q	L	S	T	A	L	A	Y	L	E	S	K	R	F	V	H	R	D	I	A	A	R	N	V	L	V	S	A	T	D	C	V	K	L	G	D	F
Template Known Secondary structure							S	S	S									T	T		B								.	T	T	T	T																						T	T	T				S			S	G	G	G						T	T
Template Predicted Secondary structure																													.
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	R	V	I	E	D	N	E	Y	T	A	R	E	G	A	K	F	P	I	K	W	T	A	P	E	A	I	N	F	G	S	F	T	I	K	S	D	V	W	S	F	G	I	L	L	M	E	I	V	T	Y	G	R	I	P	Y	P	G	M	S	N	P	E	V	I	R	A	L	E	R	G	Y	R	M	P	R	P	E
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	I	K	W	M	A	P	E	S	I	N	F	R	R	F	T	S	A	S	D	V	W	M	F	G	V	C	M	W	E	I	L	M	H	G	V	K	P	F	Q	G	V	K	N	N	D	V	I	G	R	I	E	N	G	E	R	L	P	M	P	P
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G																													T	T	S			T	T	T	T												T	T							T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		566	.	.	.															570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	P	E	E	L	Y	N	I	M	M	R	C	W	K	N	R	P	E	E	R	P	T	F	E	Y	I	Q	S	V	L	D	D	F	Y	T	A	T	E	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	C	P	P	T	L	Y	S	L	M	T	K	C	W	A	Y	D	P	S	R	R	P	R	F	T	E	L	K	A	Q	L	S	T	I	L	E	E	E	K	L	Q
Template Known Secondary structure		T												T	T		S	S	G	G	G	S																			T
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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