Job Description P08631 Confidence 100.00% Date Thu Apr 26 09:51:20 BST 2012 Rank 200 Aligned Residues 236 % Identity 22% Template c1ua2A_ PDB info PDB header:cell cycle, transferase Chain: A: PDB Molecule:cell division protein kinase 7; PDBTitle: crystal structure of human cdk7 Resolution 3.02 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																						.																																											.
Query SS confidence																						.																																											.
Query Sequence		K	L	E	K	K	L	G	A	G	Q	F	G	E	V	W	M	A	T	Y	N	.	K	H	T	K	V	A	V	K	T	M	K	P	G	S	M	S	V	E	A	F	L	A	E	A	N	V	M	K	T	L	Q	H	D	K	L	V	K	L	H	A	V	V	.	T	K	E	P	I	Y	I	I	T	E	F	M	A	K	G	S
Query Conservation																						.																																											.
Alig confidence																						.												.	.	.	.	.	.																										.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		E	K	L	D	F	L	G	E	G	Q	F	A	T	V	Y	K	A	R	D	K	N	T	N	Q	I	V	A	I	K	K	I	N	.	.	.	.	.	.	R	T	A	L	R	E	I	K	L	L	Q	E	L	S	H	P	N	I	I	G	L	L	D	A	F	G	H	K	S	N	I	S	L	V	F	D	F	M	E	T	D	L
Template Known Secondary structure											T	T									S	S			S									.	.	.	.	.	.	T															T	T	B										T	T										S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	F	L	K	S	D	E	G	S	K	Q	P	L	P	K	L	I	D	F	S	A	Q	I	A	E	G	M	A	F	I	E	Q	R	N	Y	I	H	R	D	L	R	A	A	N	I	L	V	S	A	S	L	V	C	K	I	A	D	F	G	L	A	R	V	I	E	D	N	E	Y	T	A	R	E	G	A	K	F	P
Query Conservation
Alig confidence											.	.																																																																	.	.
Template Conservation											.	.																																																																	.	.
Template Sequence		E	V	I	I	K	D	N	S	L	.	.	V	L	T	P	S	H	I	K	A	Y	M	L	M	T	L	Q	G	L	E	Y	L	H	Q	H	W	I	L	H	R	D	L	K	P	N	N	L	L	L	D	E	N	G	V	L	K	L	A	D	F	G	L	A	K	S	F	G	S	P	N	R	A	Y	H	Q	.	.	V	V	T
Template Known Secondary structure						T	T			S	.	.	S			S	S																			T	T								G	G	G					T	T									G	G	G	S	T	T	T	S								.	.
Template Predicted Secondary structure											.	.																																																																	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.
		421	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	K	W	T	A	P	E	A	.	I	N	F	G	S	F	T	I	K	S	D	V	W	S	F	G	I	L	L	M	E	I	V	T	Y	G	R	I	P	Y	P	G	M	S	N	P	E	V	I	R	A	L	E	R	G	Y	R	M	P	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		R	W	Y	R	A	P	E	L	L	F	G	A	R	M	Y	G	V	G	V	D	M	W	A	V	G	C	I	L	A	E	L	L	L	.	R	V	P	F	L	P	G	D	S	D	L	D	Q	L	T	R	I	F	E	T	L	G	T	P	T	E	E	Q	W	P	D	M	C	S	L	P	D	Y	V	T	F	K	S	F	P	G
Template Known Secondary structure			T	T							T	T		S																					.	S	S		S	S			S	S																	T	T	T	S	S	S	T	T	S	S	T	T
Template Predicted Secondary structure																																			.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
								479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	P	E	N	C	P	E	E	L	Y	N	I	M	M	R	C	W	K	N	R	P	E	E	R	P	T	F	E	Y	I	Q	S
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	L	H	H	I	F	S	A	A	G	D	D	L	L	D	L	I	Q	G	L	F	L	F	N	P	C	A	R	I	T	A	T	Q	A	L	K
Template Known Secondary structure									T	T															S	S	T	T	T	S								T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions