Job Description A8JNU2 Confidence 100.00% Date Tue Jan 22 11:54:53 GMT 2013 Rank 164 Aligned Residues 249 % Identity 26% Template c3qd2B_ PDB info PDB header:gene regulation Chain: B: PDB Molecule:eukaryotic translation initiation factor 2-alpha kinase 3; PDBTitle: crsytal structure of mouse perk kinase domain Resolution 2.81 Å

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		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																																						.	.	.	.	.	.
Query SS confidence																																					.	.																																						.	.	.	.	.	.
Query Sequence		T	D	I	M	M	K	H	K	L	G	G	G	Q	Y	G	E	V	Y	E	A	V	W	K	R	Y	G	N	T	V	A	V	K	T	L	K	.	.	E	D	T	M	A	L	K	D	F	L	E	E	A	A	I	M	K	E	M	K	H	P	N	L	V	Q	L	I	G	V	C	T	R	E	P	P	F	.	.	.	.	.	.
Query Conservation																																					.	.																																						.	.	.	.	.	.
Alig confidence														.																							.	.																																						.	.	.	.	.	.
Template Conservation														.
Template Sequence		T	D	F	E	P	I	Q	C	M	G	R	G	.	F	G	V	V	F	E	A	K	N	K	V	D	D	C	N	Y	A	I	K	R	I	R	L	P	N	R	E	L	A	R	E	K	V	M	R	E	V	K	A	L	A	K	L	E	H	P	G	I	V	R	Y	F	N	A	W	L	E	T	P	P	E	K	W	Q	E	E	M
Template Known Secondary structure														.		S								T	T	T													S	T	T	T													T	S				T	T	B												S
Template Predicted Secondary structure														.
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.		.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
									459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure		.	.	.	.	.	.	.																			.
Query SS confidence		.	.	.	.	.	.	.																			.
Query Sequence		.	.	.	.	.	.	.	Y	I	I	T	E	F	M	S	H	G	N	L	L	D	F	L	R	S	.	A	G	R	E	T	L	D	A	V	A	L	L	Y	M	A	T	Q	I	A	S	G	M	S	Y	L	E	S	R	N	Y	I	H	R	D	L	A	A	R	N	C	L	V	G	D	N	K	L	V	K	V	A	D	F	G
Query Conservation		.	.	.	.	.	.	.																			.
Alig confidence		.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		D	E	P	K	V	Y	L	Y	I	Q	M	Q	L	C	R	K	E	N	L	K	D	W	M	N	R	R	C	S	L	E	D	R	E	H	G	V	C	L	H	I	F	I	Q	I	A	E	A	V	E	F	L	H	S	K	G	L	M	H	R	D	L	K	P	S	N	I	F	F	T	M	D	D	V	V	K	V	G	D	F	G
Template Known Secondary structure																	S	S								T			S	G	G	G	S																						T	T								G	G	G					T	T									T
Template Predicted Secondary structure
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	L	M	R	D	D	T	Y	T	A	H	A	G	A	K	F	P	I	K	W	T	A	P	E	G	L	A	Y	N	K	F	S	T	K	S	D	V	W	A	F	G	V	L	L	W	E	I	A	T	Y	G	M	S	P	Y	P	A	I	D	L	T	D	V	Y	H	K	L	D	K	G	Y	R	M	E	R	P	P	G
Query Conservation
Alig confidence													.	.	.	.	.																																				.						.	.
Template Conservation													.	.	.	.	.																																				.						.	.
Template Sequence		L	V	T	A	M	D	Q	D	T	H	G	.	.	.	.	.	Q	V	T	K	L	Y	M	S	P	E	Q	I	H	G	N	N	Y	S	H	K	V	D	I	F	S	L	G	L	I	L	F	E	L	L	Y	.	S	F	S	T	Q	.	.	M	E	R	V	R	I	I	T	D	V	R	N	L	K	F	P	L	L	F	T	Q
Template Known Secondary structure		T					S						.	.	.	.	.				G	G	G	S												T																S	.						.	.												T	T
Template Predicted Secondary structure													.	.	.	.	.																																				.						.	.
Template SS confidence
		956	.	.	.	960	.	.	.	.	.	.						.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.		.	.	.	.	.			.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	P	P	E	V	Y	D	L	M	R	Q	C	W	Q	W	D	A	T	D	R	P	T	F	K	S	I	H	H	A	L	E	H	M	F	Q	E	S
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		K	Y	P	Q	E	H	M	M	V	Q	D	M	L	S	P	S	P	T	E	R	P	E	A	T	D	I	.	.	.	I	E	N	A	I	F	E	N
Template Known Secondary structure																S	S	G	G	G	S							.	.	.			S	T	T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		1044	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.				1070	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions