 |
| Job Description | Q9N6D8 | | Confidence | 4.60% | Date | Wed Feb 13 11:38:56 GMT 2013 |
| Rank | 81 | Aligned Residues | 43 |
| % Identity | 12% | Template | c4ezhA_ |
| PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:lysine-specific demethylase 6b; |
PDBTitle: the crystal structure of kdm6b bound with h3k27me3 peptide
|
| Resolution | 2.52 Å |
|
|   |   |
20 | . | . | . | . | . | . | . | . | . | 30 | |
|
. | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |
| Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | T | E | V | D | I | K | E | D | I | P | . |
. |
K | T | V | E | V | S | G | S | E | L | T | T | E | P | M | A | F | L | Q | G | L | N | S | G | N | L | M | Q | F | S | Q | Q |
| Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |
|   |   |
|   |   |   |   |
|
|
|   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|   |
|
|
|   |
|   |
|   |
|
|
|
|
|
| Template Sequence |   |
I | L | D | D | L | Y | A | S | N | I | P | V | Y | R | F | V | Q | R | P | G | D | L | V | W | I | N | A | G | T | V | H | W | V | Q | A | T | G | W | C | N | N | I | A | W | N |
| Template Known Secondary structure |   |
|  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
| T | T |
|  |  |  |  |
| T | T |
|  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
1440 | . | . | . | . | . | . | . | . | . | 1450 | . | . | . | . | . | . | . | . | . | 1460 | . | . | . | . | . | . | . | . | . | 1470 | . | . | . | . | . | . | . | . | . | 1480 | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|