Job Description A1Z6I9 Confidence 6.63% Date Tue Jan 22 12:00:06 GMT 2013 Rank 84 Aligned Residues 114 % Identity 19% Template d2nxya1 SCOP info gp120 core gp120 core gp120 core Resolution 2.00

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		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	A	A	A	E	G	R	L	I	L	P	S	D	G	T	F	T	L	L	D	T	G	L	S	I	E	S	S	I	V	E	Q	E	S	N	N	S	N	S	P	G	E	P	S	T	L	A	Q	P	K	N	S	K	N	T	Y	I	L	M	P	V	S	K	A	D	G	S	R	Q	A	G	V	V	N	G	G	L	D	S
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	S	T	V	Q	C	T	H	G	I	R	P	V	V	S	T	Q	L	L	L	N	G	S	L	A	E	E	E	V	V	I	R	S	V	N	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	A	K	T	I	I	V	Q	L	N	T	S	V	E	I	N	C	T	G	A	G	H	C	N	I	A	R	A	K
Template Known Secondary structure						S	B				B					B	S	S				S					S	S	S						S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S																T	T	T
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.														.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	Q	S	I	A	A	A	A	A	Q	L	E	F	L	L	D	P	K	Y	S	S	T	P	E	A	S	P	D	V	E	P	S	V	E	L	A	E	G	G	A	A	G	E	I	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	N	N	T	L	K	Q	I	A	S	K	L	R	E	Q	F	G	N	N	K	T	I	I	F	K	Q	S	S	G	G	D	P	E	I	V	T	H	S	F	N	C	G	G	E	F	F	Y
Template Known Secondary structure																			T	T											S						S						T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions