Return to main results Retrieve Phyre Job Id

Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank25Aligned Residues234
% Identity24%Templatec3cdzB_
PDB info PDB header:blood clottingChain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii
Resolution3.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.........280.........290.........300....... ..310 .
Predicted Secondary structure 






































.


..........
Query SS confidence 
































































.


. . . . . . . . . .
Query Sequence  IPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTG. NAG. . . . . . . . . . T
Query Conservation   


 
 
  

 
 
 
 
 
  
 







 
  

 




 





 

 



 
 
.
 
..........
Alig confidence 






















.














..























.


..........
Template Conservation   


 


  

 
 
 


   . 
 


 


     .. 

        
 

 
 

 
 
    

   
  
 
Template Sequence  LLGPYIRAEVEDNIMVTFRNQAS. RPYSFYSSLISYEED. . QRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKA
Template Known Secondary structure  TS



SS
SS.S
B


BS




S
..
S
SS





B
TT

TTS


TTS
S
Template Predicted Secondary structure 








.






..




























Template SS confidence 















































































   1758.1760.........1770.........1780 .........1790..... ....1800.........1810.........1820.........1830....
 
   312..... ..320.........330.........340.........350.........360.........370. ......
Predicted Secondary structure 





..
























............




Query SS confidence 





. .





















































. . . . . . . . . . . .





Query Sequence  HFWHAH. . TGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGR. . . . . . . . . . . . LAVNTG
Query Conservation 





..

 
  


 





 
        


 
  
 






 
          ............     
Alig confidence 





..






























.





















............





Template Conservation    




    
   

 
 


     
         
. 
  
 
   

  

    
                   
Template Sequence  WAYFSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTV. QEFALFLTIFDETKSWYFTENMERNCRAPCNIQMEDPTFK
Template Known Secondary structure 

SSTTTT

SS


SSSS

TT
.






SSSSSTTTSS
SSS



SSSS

S
Template Predicted Secondary structure 






















.



























Template SS confidence 















































































   1835....1840.........1850.........1860.........1870... ......1880.........1890.........1900.........1910...
 
   378.380.........390.........400.........410.........420.........430.........440.........450.......
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  QDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTII
Query Conservation    









                   
  













     





 




 

  


  

 
 
Alig confidence 










...........




























.............................
Template Conservation   
     


 ...........     
 
    
  

  
 
 
     .............................
Template Sequence  ENYRFHAINGY. . . . . . . . . . . IMDTLPGLVMAQDQRIRWYLLSMGSNENI. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SSSS


SSS
...........
SS

S

SSS
B
SSSS

.............................
Template Predicted Secondary structure 






...........
















.............................
Template SS confidence 















































































   1914.....1920.... .....1930.........1940.........1950...
 
   458.460.........470.........480.........490.........500.........510.........520.........530.......
Predicted Secondary structure 



























































Query SS confidence 















































































Query Sequence  SFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRAD
Query Conservation 
 








 
 
  
 
 

               


 
            
                        
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   538.540.........550.........560.........570.........580.........590.........600.........610.......
Predicted Secondary structure 

































































Query SS confidence 















































































Query Sequence  AVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDD
Query Conservation        
      
        
                               
      

 

   
  
 
     
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   618.620.........630.........640.........650.........660.........670.........680.........690.......
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  IPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHAL
Query Conservation         
                

 
  
 





 
        







 
 


 
                
Alig confidence  ................................................














.................
Template Conservation  ................................................
  
 

  
   
 .................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HSIHFSGHVFTVRKK. . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................TT

SS.................
Template Predicted Secondary structure  ................................................






.................
Template SS confidence 















































































   1954.....1960........
 
   698.700.........710.........720.........730.........740.........750........
Predicted Secondary structure 





























Query SS confidence 




























































Query Sequence  ELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHI
Query Conservation    
       

 


 



 




 




 




 







 
   

  

 
Alig confidence  .............















































Template Conservation  .............     

  
 

   

 
   


 
  



  
   

     
Template Sequence  . . . . . . . . . . . . . EEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLV
Template Known Secondary structure  .............SS
BT



S


TTTT
Template Predicted Secondary structure  .............
















Template SS confidence 




























































   19691970.........1980.........1990.........2000.........2010......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions