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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank6Aligned Residues466
% Identity32%Templatec1gycA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions
Resolution1.9 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   225....230.........240.........250.........260..... ....270.........280.........290.........300
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Query Sequence  QCVLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHME. . . . GMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNT
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Template Sequence  APVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCPIASGHS
Template Known Secondary structure 
TTS

TTBSS


TT




GGG
S
B
T


TT
GGGS

BTTTB

B
TT
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   13......20.........30.........40.........50.........60.........70.........80.........90..
 
   301...... ..310.........320.........330.........340.........350.........360.........370........
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Query Sequence  FRYQWTG. . NAGTHFWHAHTGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQ
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Template Sequence  FLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP. . KDPHASRYDVDNESTVITLTDWYHTAA. . . . . . RLGPRFPL
Template Known Secondary structure 
SS


STTGGGGT

T..T
TTGGG
SB
SGGG
SS
T......TTS
SS
S
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   93......100.........110.........120......... 130.........140.........150...... ...160....
 
   379380.........390.........400.........410.........420.........430.........440.........450........
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Query Sequence  DPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIIS
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Template Sequence  GADATLINGLGRSAS. . . . . TPTAALAVINVQHGKRYRFRLVSISCDPN. YTFSIDGHNLTVIEVDGINSQPLLVDSIQI
Template Known Secondary structure  S
STTB

BTT.....
TTS



TT


SS

.TT

TTSB
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   165....170......... 180.........190.........200........ .210.........220.........230........
 
   459460.........470.........480........ .490.........500.........510.........520.........530.......
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Query Sequence  FSGERYDFVISADQPVGAYWIQLRGLGECG. IRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRAD
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Template Sequence  FAAQRYSFVLNANQTVGNYWIRANPNFGTVGFAGGINSAILRYQGAPVAEPTTTQTTSVIPLIETNLHPLARMPVPGSPT
Template Known Secondary structure 
TT


S
SSSSSS
S
GGGTTTTS
SS








SSB

GGG

BSS



SS
SS
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   538.540.........550.........560.........570.........580.........590.........600.........610.......
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Query Sequence  AVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDD
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Template Conservation        .........................................               
                 
Template Sequence  PGGVDK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ALNLAFNFNGTNFFINNASFTPPTVPVLLQILS
Template Known Secondary structure  TT
SS.........................................


SS
TTB




SS
T
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   319320.... .....330.........340.........350.......
 
   618.620.........630.........640.........650.........660.........670.........680.........690.......
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Query Sequence  IPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHAL
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Template Sequence  . . . . . . . . . . . GAQTAQDLLPAGSVYPLPAHSTIEITLPATALAPGAPHPFHLHGHAFAVVRSAGST. . . . . . . . . . . . .
Template Known Secondary structure  ...........T

STTTSSSTTS
TT


TTS
S
S
TT


TT

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   358.360.........370.........380.........390.........400.........410...
 
   698.700.........710.........720 .........730.........740.........750.........760.. .......770..
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Query Sequence  ELDQMGMLERHFSKPPLKDTIAV. . . PNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTA. . DLPPVPPRFP
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Template Sequence  . . . . . . . . TYNYNDPIFRDVVSTGTPAAGDNVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADVKAANPVPKAWS
Template Known Secondary structure  ........


SSS

S


GGGT


S
SSTT
T



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   414.....420.........430.........440.........450.........460.........470.........480.....
 
   773 ....
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Query Sequence  T. CGDH
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Template Conservation    
   
Template Sequence  DLCPIY
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   486...490.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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