Job Description B7YZT1 Confidence 77.19% Date Tue Jan 22 11:31:19 GMT 2013
Rank 145 Aligned Residues 72
% Identity 19% Template c1qleB_
PDB info
PDB header: oxidoreductase/immune systemChain: B: PDB Molecule: cytochrome c oxidase polypeptide ii;
PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment
Resolution 3.0 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
626 . . . 630 . . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700 . . . . .
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
G D N R P P N C G P N C E C T H M V D I P L G A I V E V V L V D E V Q Q V N L S H P F H L H G T A F Y V V G L G R S P D K S I K K I N L K H A L E L D Q M G M L
Query Conservation  
                                                                                                             
Alig confidence  
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Template Conservation  
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Template Sequence  
A D A G Y S E D E Y L L A T D N P V V V P V G K K V L V Q V T A T D V I .
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H A W T I .
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Template Known Secondary structure  
G G G T G G G S S S B S S T T S B S S S . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Predicted Secondary structure  
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Template SS confidence  
   
145 . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180
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706 . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . .
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
E R H F S K P P L K D T I A V P N N G Y V V I R F R A D N P G Y W L F H C
Query Conservation  
               
Alig confidence  
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Template Conservation  
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Template Sequence  
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P A F A V K Q D A V P G R I A Q L W F S V D Q E G V Y F G Q C
Template Known Secondary structure  
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Template Predicted Secondary structure  
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Template SS confidence  
   
186 . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . .
 
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]