 |
Job Description | B7YZT1 | Confidence | 99.97% | Date | Tue Jan 22 11:31:19 GMT 2013 |
Rank | 58 | Aligned Residues | 122 |
% Identity | 24% | Template | d1gska1 |
SCOP info | Cupredoxin-like
| Cupredoxins
| Multidomain cupredoxins
|
Resolution | 1.7 |
|
 |
  |   |
214 | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | 270 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | N | A | T | N | T | V | W | S | H | C | Q | C | V | L | A | D | G | V | E | R | G | I | L | T | A | N | R | M | I | P | G | P | S | I | Q | V | C | E | N | D | K | V | V | I | D | V | E | N | H | M | E | G | M | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | T | I | H | W | H | G | I | W | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|   |   |
|   |
|   |   |
|
|
|
|   |
|
|
|   |
|   |
|   |   |
|
|   |
|   |
|   |
|   |
|   |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|   |
|   |
|
| . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |   |
Template Sequence |   |
Y | E | V | T | M | E | E | C | T | H | . |
. |
Q | L | H | R | D | L | P | P | T | R | L | W | G | Y | N | G | L | F | P | G | P | T | I | E | V | K | R | N | E | N | V | Y | V | K | W | M | N | N | L | P | . |
S | T | H | F | L | P | I | D | H | T | I | H | E | P | E | V | K | T | V | V | H | L | H | G | G | V | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . |
| S | S | T | T | S |
|
|  |  |  |  |  |  | T | T | B | S | S |
|
| B |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |
|
|
| . | S | S |
| S | S |
|
|
| T | T |
|
|
|
| S |
|
| B |
|  |  |  |  | T |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
28 | . | 30 | . | . | . | . | . | . | . | |
|
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
. | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
  |
  |   |
279 | 280 | . | . | . | . | . | . | . | . | . | 290 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | |
. | |
. | 310 | . | . | . | . | . | . | . | |
|
|
|
. | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . |
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | G | S | Q | Y | Y | D | G | V | P | F | V | T | . |
. |
. |
. |
. |
Q | C | P | I | Q | Q | G | N | T | F | R | Y | Q | W | T | G | . |
N | . |
A | G | T | H | F | W | H | A | H | . |
. |
. |
. |
T | G | L | Q | K | L | D | G | L | Y | G | S | V | V | V | R | Q | P | P | S | R | D | P |
Query Conservation |   |
  |   |
|
|   |
|
|
|
|
|   |
|
| . | . | . | . | . |
|
|
|
|   |
|
|   |
|
|
|
|   |
|   |
| . |
| . |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|   |
|   |   |
|
|
|   |
|
|
|
|
|
|   |
|   |   |   |   |   |
Alig confidence |   |
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|   |   |
|
|   |
|   |   |   |   |   |
|
Template Sequence |   |
P | D | D | . |
. |
S | D | G | Y | P | E | A | W | F | S | K | D | F | E | Q | T | G | P | Y | F | K | R | E | V | Y | H | Y | P | N | Q | Q | R | G | A | I | L | W | Y | H | D | H | A | M | A | L | T | R | L | N | V | Y | A | G | L | V | G | A | Y | I | I | H | D | P | K | E | K | R | L |
Template Known Secondary structure |   |
| G | G | . | . | G | S |
|
| T | T | S |
| B |
| G | G | G | S | S | B |
| T | T |
|
|
| S |  |  |  |  |
|
|
| S |
| S |  |  |  |  |  |  |  |
|
| T | T | T |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |  |
| G | G | G | T | T |
|
Template Predicted Secondary structure |   |
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
112 | . | . | |
|
. | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|