Return to main results Retrieve Phyre Job Id

Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank39Aligned Residues209
% Identity25%Templatec1sddA_
PDB info PDB header:blood clottingChain: A: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270....... ..280.........290... ......300.........
Predicted Secondary structure 

















....















..









....
Query SS confidence 





































. . . .















. .















. . . .
Query Sequence  NRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIW. . . . QRGSQYYDGVPFVTQC. . PIQQGNTFRYQWTGNA. . . .
Query Conservation 


 


 
 
  

 
 
 
 
 
  
 







 ....
  

 




 



..

 

 



 
 

 ....
Alig confidence 

.






















.










....















..















....
Template Conservation   
. 


 


  

 
 
   
 
 .   


 


      

    

          
 

 
 

 
       
Template Sequence  SG. LLGPTLYAEVGDIMKVHFKNKAH. KPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIISEHSGP
Template Known Secondary structure 

.S



TT

SS.S
B

SS


TTTS


S




TTT
B
TT


GGGS
Template Predicted Secondary structure 

.









.










































Template SS confidence 















































































   55. ...60.........70......... 80.........90.........100.........110.........120.........130..
 
   310.........320 .........330.........340.........350.........360.........370.........380
Predicted Secondary structure  .......








..































Query SS confidence  . . . . . . .










. .



























































Query Sequence  . . . . . . . GTHFWHAHTGL. . QKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP
Query Conservation  .......









 ..
  


 





 
        


 
  
 






 
               
  
Alig confidence  .......










..



























.















..........




Template Conservation     
   

  



         

 
 


   
           
. 
  
 
   

  
 ..........     
Template Sequence  THDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQKMFE. KQHVLMFAVFDESKSW. . . . . . . . . . NQTSS
Template Known Secondary structure 
SSS
S

SSSTT


TT
B
TTSSBSSS
.




B

TTSSS..........S



Template Predicted Secondary structure 




























.





..........




Template SS confidence 















































































   133......140.........150.........160.........170.........180 .........190...... ...200.
 
   381........390.........400.........410.........420.........430.........440.........450.........460
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFS
Query Conservation 








                   
  













     





 




 

  


  

 
 
 
Alig confidence 







.................






















................................
Template Conservation      


 .................      
  

  

  
     ................................
Template Sequence  LMYTVNGY. . . . . . . . . . . . . . . . . VNGTMPDITVCAHLIGMSSGPEL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SSS
.................
SS









BB


SSS
................................
Template Predicted Secondary structure 



.................














................................
Template SS confidence 















































































   202....... 210.........220.........230..
 
   461........470.........480.........490.........500.........510.........520.........530.........540
Predicted Secondary structure 




























































Query SS confidence 















































































Query Sequence  GERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVC
Query Conservation 







 
 
  
 
 

               


 
            
                           
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   541........550.........560.........570.........580.........590.........600.........610.........620
Predicted Secondary structure 

































































Query SS confidence 















































































Query Sequence  VSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPP
Query Conservation     
      
        
                               
      

 

   
  
 
        
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   621........630.........640.........650.........660.........670.........680.........690.........700
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  EYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHALELD
Query Conservation      
                

 
  
 





 
        







 
 


 
                  
Alig confidence  .............................................














....................
Template Conservation  .............................................

 
 


 
   
 ....................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FSIHFNGQVLEQNHH. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .............................................

B
SSTT
TT....................
Template Predicted Secondary structure  .............................................



....................
Template SS confidence 















































































   239240.........250...
 
   701........710.........720.........730.........740.........750......
Predicted Secondary structure 


























Query SS confidence 























































Query Sequence  QMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIF
Query Conservation         

 


 



 




 




 




 







 
   

  

Alig confidence  .............










........























Template Conservation  .............  
 
 
 

 ........  

 
  


   
   

    
Template Sequence  . . . . . . . . . . . . . KISAITLVSAT. . . . . . . . STTGRWTIASLIPRHFQAGMQAYI
Template Known Secondary structure  .............
S


TT
........
B





B

STTTGGGT
B


Template Predicted Secondary structure  .............



........








Template SS confidence 























































   254.....260.... .....270.........280........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions