Return to main results Retrieve Phyre Job Id

Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank36Aligned Residues219
% Identity36%Templatec3t9wA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:small laccase, multi-copper oxidase; PDBTitle: small laccase from amycolatopsis sp. atcc 39116
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   241........250.........260.........270.........280.........290.........300.........
Predicted Secondary structure 










































...........
Query SS confidence 




































































. . . . . . . . . . .
Query Sequence  RMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTGNA. . . . . . . . . . .
Query Conservation 

 


 
 
  

 
 
 
 
 
  
 







 
  

 




 





 

 



 
 

 ...........
Alig confidence 
























.











..







.



















...........
Template Conservation     


 

   

 
 
   
   .   


 

   ..    

  .     
 

 
  
                 
Template Sequence  ATVPGPVLEMWEGDTLEIDLVNTTD. RVLSLHPHGVDY. . DVNSDGTL. MNGSAVMPGQTRRYTWRSHVGYRRADGSWAE
Template Known Secondary structure 
BSS


TT

SS.S
B

SSSB
..
GGGS

T.TTT

B
TT
B




TTS

Template Predicted Secondary structure 











.



..







.






















Template SS confidence 















































































   60.........70.........80.... .....90...... ...100.... .....110.........120.........130.....
 
   310........ .320.........330.........340.........350.........360.........370.........380
Predicted Secondary structure  ...








......































Query SS confidence  . . .








. . . . . .





























































Query Sequence  . . . GTHFWHAHT. . . . . . GLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP
Query Conservation  ...








......
 
  


 





 
        


 
  
 






 
               
  
Alig confidence  ...








......






















........








......................
Template Conservation     
   
                

 
 


   
     ........ 
  
    ......................
Template Sequence  GTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGDLLPK. . . . . . . . RQFTVVFND. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 



SSSSSTT
T

TT



S........T......................
Template Predicted Secondary structure 
























........



......................
Template SS confidence 















































































   136...140.........150.........160.........170...... ...180.....
 
   381........390.........400.........410.........420.........430.........440.........450.........460
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFS
Query Conservation 








                   
  













     





 




 

  


  

 
 
 
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   461........470.........480.........490.........500.........510.........520.........530.........540
Predicted Secondary structure 




























































Query SS confidence 















































































Query Sequence  GERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVC
Query Conservation 







 
 
  
 
 

               


 
            
                           
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   541........550.........560.........570.........580.........590.........600.........610.........620
Predicted Secondary structure 

































































Query SS confidence 















































































Query Sequence  VSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPP
Query Conservation     
      
        
                               
      

 

   
  
 
        
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
Template SS confidence 















































































  
 
   621........630.........640.........650.........660.........670.........680.........690.........700
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  EYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHALELD
Query Conservation      
                

 
  
 





 
        







 
 


 
                  
Alig confidence  .........






























...























.............
Template Conservation  .........   

        
    

 

  
 
 
 ...  
 




  
     
      .............
Template Sequence  . . . . . . . . . MMINNRAHHDAPTFEANLGERVEWIAIGHGS. . . NFHTFHLHGHRWLDNRTGMRTSEY. . . . . . . . . . . . .
Template Known Secondary structure  .........TTT

TT


TT
SS...


TT

SSSSSS

STT.............
Template Predicted Secondary structure  .........



















...













.............
Template SS confidence 















































































   186...190.........200.........210...... ...220.........230.........240
 
   701........710.........720.........730 .........740.........750.........760.......
Predicted Secondary structure 
















...


















Query SS confidence 





























. . .




































Query Sequence  QMGMLERHFSKPPLKDTIAVPNNGYVVIRF. . . RADNPGYWLFHCHFLFHIVIGMNLIFHIGTTADLPPV
Query Conservation         

 


 



 




 




... 




 







 
   

  

 

      
 
Alig confidence  .........




















...




































Template Conservation  .........      
 
 
 

       
      

 
  


   
   

     
       
 
Template Sequence  . . . . . . . . . DPSPLIDIKDLNPGVSFGFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRNADGTMPA
Template Known Secondary structure  .........



S

TT
TTTTT
S
STT

TTS


T
Template Predicted Secondary structure  .........





























Template SS confidence 





































































   241........250.........260.........270.........280.........290.........300.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions