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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank8Aligned Residues460
% Identity34%Templatec1a65A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:laccase; PDBTitle: type-2 cu-depleted laccase from coprinus cinereus
Resolution2.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230.........240.........250.........260...... ...270.........280.........290.........300..
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Query Sequence  VLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHMEG. . . . MEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFR
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Template Sequence  VSPDGFTRAGILVNGV. HGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCPISPGHAFL
Template Known Secondary structure 
TTS

TTB.SS
TT





TTS

SB
T


TT
GGGS

BTTTB

B
TT
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   16...20.........30. ........40.........50.........60.........70.........80.........90....
 
   303... ...310.........320.........330.........340.........350.........360.........370.........380
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Query Sequence  YQWT. . GNAGTHFWHAHTGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP
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Template Sequence  YKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDP. . HAALYDEDDENTIITLADWYHIPAPSI. . . . . . . QGAAQP
Template Known Secondary structure 

TT


STTGGGGT

TT
T..TGGG
SB
SGGG
SS
GGG
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   95....100.........110.........120.........130.. .......140.........150......... 160.....
 
   381........390.........400.........410.........420.........430.........440.........450.........460
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Query Sequence  ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFS
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Template Sequence  DATLINGKGRYVGG. . . . . PAAELSIVNVEQGKKYRMRLISLSCDPN. WQFSIDGHELTIIEVDGELTEPHTVDRLQIFT
Template Known Secondary structure  STTB

BTT
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TT


SS

.TT

TTSB
T
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   166...170......... 180.........190.........200....... ..210.........220.........230.........
 
   461........470.........480........ .490.........500.........510.........520.........530.....
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Query Sequence  GERYDFVISADQPVGAYWIQLRGLGECG. . . . . IRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKR
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Template Sequence  GQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNPA. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T


S
SSS

GGGGGG

GGGTTTTS
SS






SS

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   240.........250.........260.........270.........280.........290.........300.
 
   536...540.........550.........560.........570.........580.........590.........600.........610.....
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Query Sequence  ADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQI
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Template Sequence  . . QLNEADLHALIDPAAPGIPTPGAADVNLRFQL. . . . . . . . . . . . . . . . . . . . . GFSGGRFTINGTAYESPSVPTLLQI
Template Known Secondary structure  ..B

GGG
BBSSS
S
SS
SSTT
SS

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SSSTTB




SS
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   302.......310.........320.........330... ......340.........350........
 
   616...620.........630.........640.........650.........660.........670.........680.........690.....
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Query Sequence  DDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKH
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Template Sequence  MS. . . . . . . . . . . GAQSANDLLPAGSVYELPRNQVVELVVPAGVL. . GGPHPFHLHGHAFSVVRSAGSS. . . . . . . . . . .
Template Known Secondary structure  T...........T

SGGGSSSTTS
SS


ST..T


TT


TT

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   359360 .........370.........380.........390.. .......400.........410....
 
   696...700.........710.........720.. .......730.........740.........750.........760. ........770.
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Query Sequence  ALELDQMGMLERHFSKPPLKDTIAVPN. NGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTT. . . ADLPPVPPRF
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Template Sequence  . . . . . . . . . . TYNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDMANTVDANNPPVEWA
Template Known Secondary structure  ..........


SSSB
S

STT


S
SSTTT

GGG



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   415....420.........430.........440.........450.........460.........470.........480....
 
   772.....
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Query Sequence  PTCGDH
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Template Conservation    
   
Template Sequence  QLCEIY
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   485....490
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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