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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank14Aligned Residues409
% Identity22%Templatec2xllC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:bilirubin oxidase; PDBTitle: the crystal structure of bilirubin oxidase from myrothecium2 verrucaria
Resolution2.305 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230.........240.........250.........260.........270.........280.........290.........300......
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Query Sequence  VLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWT
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Template Sequence  VYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAE. APNSVHLHGSFS. . RAAFDGWA. . . EDITEPGSFKDYYYP
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STTS

TT
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T


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GGGTT
T...T

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   50.........60.........70.........80........ .90.........100 ........ .110.........120...
 
   307 . .310........ .320.........330.........340.........350.........360.........370.........380
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Query Sequence  G. N. AGTHFWHAHT. . . . GLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP
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Template Sequence  NRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGE. FDIPMILTSKQYTANGNL. VTTNGELNSFWG
Template Known Secondary structure 

S
S

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   124.....130.........140.........150.........160.........170. ........180......... 190.........200.
 
   381........390.........400.........410.........420.........430...... ...440........ .450..
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Query Sequence  ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGH. . . . . . . GMTVIATDGEPV. HPVD
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Template Sequence  DVIHVNGQ. . . . . . . . . . . . . . PWPFKNVEPR. KYRFRFLDAAVSRS. FGLYFADTDAIDTRLPFKVIASDSGLLEHPAD
Template Known Secondary structure  STT..............S

SS.

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TTS


TT
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   202....... 210......... 220.........230... ......240.........250.........260.....
 
   453......460.........470.........480.........490.........500.........510.........520.........530..
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Query Sequence  VNTIISFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICD
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Template Sequence  TSLLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGT. . . . . . . . . . . . . . . . . . . . . . DTDYDNTDKVMRFVVADD
Template Known Secondary structure  S

TT
GGGGTT

TT

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   266...270.........280.........290.........300..... ....310.........320...
 
   533......540.........550.........560.........570.........580.........590.........600.........610..
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Query Sequence  RKRADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPL
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Template Sequence  TTQPDTSVVPANLRDVPFPSPTTNTPRQFRFGR. . . . . . . . . . . . . . . . . . . . . . . . . . . TGPTWTINGVAFADVQNRL.
Template Known Secondary structure 
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TT
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   324.....330.........340.........350...... ...360.........370.....
 
   613......620.........630.........640.........650.........660.........670.........680.........690..
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Query Sequence  SQIDDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKIN
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LANVPVGTVERWELINAGN. . GWTHPIHIHLVDFKVISRTSGNNAR. . . . .
Template Known Secondary structure  .............................TT


S..S

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   376...380.........390.... .....400.........410.........
 
   693......700.........710.........720.........730. ........740.........750........
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Query Sequence  LKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFR. ADNPGYWLFHCHFLFHIVIGMNLIFHI
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Template Sequence  . . . . . . . . . . . . . TVMPYESGLKDVVWLGRRETVVVEAHYAPFPGVYMFHCHNLIHEDHDMMAAFNA
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GGGSS
BS
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S

S
TT
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   420.........430.........440.........450.........460.........470...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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