Return to main results Retrieve Phyre Job Id

Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank26Aligned Residues243
% Identity26%Templatec2r7eB_
PDB info PDB header:blood clottingChain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii
Resolution3.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.........280.........290.........300....... ..310 .
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Query Sequence  IPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTG. NAG. . . . . . . . . . T
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Template Sequence  LLGPYIRAEVEDNIMVTFRNQAS. RPYSFYSSLISYEED. . QRQGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKA
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   1758.1760.........1770.........1780 .........1790..... ....1800.........1810.........1820.........1830....
 
   312.......320 .........330.........340.........350...... ...360.........370.........380.
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Query Sequence  HFWHAHTGL. . QKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLI. . . . . . SDWLHEDAAERYPGRLAVNTGQDPE. .
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Template Sequence  WAYSSDVDLEKDVHSGLIGPLLVCHTNTLNPAHGRQVTV. QEFALFFTIFDETKSWYFTENMERNCRAPCNIQMEDPTFK
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TTGGGSS
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   1835....1840.........1850.........1860.........1870... ......1880.........1890.........1900.........1910...
 
   382.......390.........400.........410.........420.........430.........440.........450.......
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Query Sequence  . . . . SMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTII
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Template Sequence  ENYRFHAINGY. . . . . . . . . . . IMDTLPGLVMAQDQRIRWYLLSMGSNENI. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTS

TTS
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SSS

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   1914.....1920.... .....1930.........1940.........1950...
 
   458.460.........470.........480.........490.........500.........510.........520.........530.......
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Query Sequence  SFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRAD
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   538.540.........550.........560.........570.........580.........590.........600.........610.......
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Query Sequence  AVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDD
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   618.620.........630.........640.........650.........660.........670.........680.........690.......
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Query Sequence  IPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHAL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HSIHFSGHVFTVRKK. . . . . . . . . . . . . . . . .
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   1954.....1960........
 
   698.700.........710.........720.........730.........740.........750.........760.......
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Query Sequence  ELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTADLPPV
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Template Sequence  . . . . . . . . . . . . . EEYKMALYNLYPGVFETVEMLPSKAGIWRVECLIGEHLHAGMSTLFLVYSNKCQTPL
Template Known Secondary structure  .............S

S

TT




SS
B


B


STTB





B

SS


B
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   19691970.........1980.........1990.........2000.........2010.........2020.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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