Return to main results Retrieve Phyre Job Id

Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank9Aligned Residues459
% Identity30%Templatec1v10A_
PDB info PDB header:oxidaseChain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals
Resolution1.7 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230.. .......240.........250.........260...... ...270.........280.........290.........300.
Predicted Secondary structure 




.













....


























Query SS confidence 





.

































. . . .


































Query Sequence  VLADGV. ERGILTANRMIPGPSIQVCENDKVVIDVENHMEG. . . . MEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTF
Query Conservation 
  

 . 
 
  



 


 
 
  

 
 
 
 
 
  ....
 







 
  

 




 





 

 

Alig confidence 





.

































....


































Template Conservation     

         

  




    

 
 
   
 
        



 


        


   

 

 

   
Template Sequence  LDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNESF
Template Known Secondary structure 
TTSS

SSSSS


TT




TTS


B
T


TT
GGGS

BTTTB

B
TT
Template Predicted Secondary structure 


















































Template SS confidence 















































































   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   302..... ..310.........320.........330.........340.........350.........360.........370.........
Predicted Secondary structure 
..









































Query SS confidence 





. .







































































Query Sequence  RYQWTG. . NAGTHFWHAHTGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQD
Query Conservation 

 
 
..
 









 
  


 





 
        


 
  
 






 
               
  
Alig confidence 





..


































..


















.........






Template Conservation   
 
      

 


 

  
   

 
 


          ..    
 
  
 
 
     .........       
Template Sequence  VYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSL. . YDVDDASTVITIADWYHSL. . . . . . . . . STKAPPA
Template Known Secondary structure 
TT


STTGGGGT

TT
TTGGG..
SB
SGGG
SS
.........




S
Template Predicted Secondary structure 





















..










.........






Template SS confidence 















































































   94.....100.........110.........120.........130...... ...140.........150..... ....160..
 
   380.........390.........400.........410.........420.........430.........440.........450.........
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  PESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISF
Query Conservation 









                   
  













     





 




 

  


  

 
 
 
Alig confidence 











....































.






























Template Conservation        

    ....   


   
 
 
  
   






     .  
 
 
    


 

    
     
 
 
Template Sequence  PDTTLINGLGRN. . . . SANPSAGQLAVVSVQSGKRYRFRIVSTSCFPN. YAFSIDGHRMTVIEVDGVSHQPLTVDSLTIF
Template Known Secondary structure 
STTB


....SS
GGGS



TT


SS

.TT

TTSB
Template Predicted Secondary structure 








....

















.




Template SS confidence 















































































   170.........180. ........190.........200.........210... ......220.........230.........240....
 
   460.........470.........480........ .490.........500.........510.........520.........530........
Predicted Secondary structure 














.












































Query SS confidence 




























.

















































Query Sequence  SGERYDFVISADQPVGAYWIQLRGLGECG. IRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADA
Query Conservation 








 
 
  
 
 

        .       


 
            
                         
Alig confidence 




























.





































............
Template Conservation 

 
 



      
 
 
                                                ............
Template Sequence  AGQRYSVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQNSGTALNEANLIPL. . . . . . . . . . . .
Template Known Secondary structure  TT


S
SSSSSS
S
GGGTTTT

S








S
B

GGG

BS............
Template Predicted Secondary structure 















































............
Template SS confidence 















































































   245....250.........260.........270.........280.........290.........300.........310..
 
   539540.........550.........560.........570.........580.........590.........600.........610........
Predicted Secondary structure 

































































Query SS confidence 















































































Query Sequence  VCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDI
Query Conservation       
      
        
                               
      

 

   
  
 
      
Alig confidence  .......























.....................


























.
Template Conservation  .......                        .....................         
                 .
Template Sequence  . . . . . . . INPGAPGNPVPGGADINLNLRIGR. . . . . . . . . . . . . . . . . . . . . NATTADFTINGAPFIPPTVPVLLQILS.
Template Known Secondary structure  .......S



SS
SSTT
SS


.....................
SSSS

SS





SS
.
Template Predicted Secondary structure  .......















.....................
















.
Template SS confidence 















































































   313......320.........330...... ...340.........350.........360...
 
   619620.........630.........640.........650.........660.........670.........680.........690........
Predicted Secondary structure 























































Query SS confidence 















































































Query Sequence  PPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHALE
Query Conservation        
                

 
  
 





 
        







 
 


 
                 
Alig confidence  ..........































.....


















..............
Template Conservation  ..........                   

  

   
   .....

 



  
 

   
  ..............
Template Sequence  . . . . . . . . . . GVTNPNDLLPGGAVISLPANQVIEISIPGGGN. . . . . HPFHLHGHNFDVVRTPGSS. . . . . . . . . . . . . .
Template Known Secondary structure  ..........T


GGGSSSTTT
TT


BS.....
SS


TT
S..............
Template Predicted Secondary structure  ..........






















.....







..............
Template SS confidence 















































































   364.....370.........380.........390..... ....400.........410....
 
   699700.........710.........720.... .....730.........740.........750.........760.. .......770... .
Predicted Secondary structure 


















.













..










.
Query SS confidence 

























.





































. .










.
Query Sequence  LDQMGMLERHFSKPPLKDTIAVPNNG. YVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTA. . DLPPVPPRFPT. C
Query Conservation   
       

 


 



 




. 




 




 







 
   

  

 

   ..   
 
  

 .
Alig confidence  .......


















.





































..










.
Template Conservation  .......      
  



 


 
  
 


 

 

 
  




 
 
 


          
             
Template Sequence  . . . . . . . VYNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNIPIANAISPAWDDLC
Template Known Secondary structure  .......



SS

S

BSS


S
S
TTT
SGGGS


T
Template Predicted Secondary structure  .......





































Template SS confidence 















































































   415....420.........430.........440.........450.........460.........470.........480.......
 
   775...
Predicted Secondary structure 



Query SS confidence 



Query Sequence  GDHV
Query Conservation 
   
Alig confidence 



Template Conservation      
Template Sequence  PKYN
Template Known Secondary structure  T
Template Predicted Secondary structure 



Template SS confidence 



   488.490.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions