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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank21Aligned Residues470
% Identity18%Templatec1kcwA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ceruloplasmin; PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.........280.........290.... .....300....... ..310
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Query Sequence  IPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCP. . . . IQQGNTFRYQWTG. NAG. . . . . . .
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Template Sequence  ILGPVIWAEVGDTIRVTFHNKGA. YPLSIEPIGVRF. . NKNNEGTYYSPVPPSASHVAPTETFTYEWTVPKEVGPTNADP
Template Known Secondary structure  TS


TT

SS.S
B

TSB
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TTS
SS






BTTBB
TT

GGGS

TTS
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   429430.........440.........450. ........460... ......470.........480.........490.........500.....
 
   311........320 .........330.........340.........350.........360.........370.........380
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Query Sequence  . . . THFWHAHTGL. . QKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDP. . . . .
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Template Sequence  VCLAKMYYSAVDPTKDIFTGLIGPMKICKKGSLHANGRQKDVD. KEFYLFPTVFDENESLLLEDNIRMFTTAPDQVDKED
Template Known Secondary structure  S

SST

TT
B
TTS
BTT
S.
GGG
TT
S
STT

TT
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   514.....520.........530.........540.........550...... ...560.........570.........580.........590..
 
   381........390.........400.........410.........420.........430.........440 .........450.
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Query Sequence  . . . . . . . ESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTV. . IATDGEPVHPV
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Template Sequence  EDFQESNKMHSMNGF. . . . . . . . . . . MYGNQPGLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQ
Template Known Secondary structure  TTTB...........
TT




TT




STT

TT

TTS
TT
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   593......600....... ..610.........620.........630.........640.........650.........660.
 
   452.......460......... 470.........480.........490.........500...
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Query Sequence  DVNTIISFSGERYDFVIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . ADQPVGAYWIQLRGLGECGIRRAQQLAILRYARG
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Template Sequence  TSLTLHMWPDTEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQE
Template Known Secondary structure 



S

STT


S





S




S
S

T
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   662.......670.........680.........690.........700.........710.........720.........730.........740.
 
   504.....510.........520.........530.........540.........550.........560.........570.........580...
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Query Sequence  PYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTY
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Template Conservation         
        
     
     
                    
 
    

   
   
           
  
Template Sequence  QNVSNAFLDKGEFYIGSKYKKVVYRQYTDSTFRVPVERKAEEEHLGILGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQ
Template Known Secondary structure 




TTT

TTT


SSSTT

SB



GGGGGGTTS


TT
SSS
B

TT
B
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   742.......750.........760.........770.........780.........790.........800.........810.........820.
 
   584.....590.........600.........610.........620.........630..
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Query Sequence  NRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPPEYFCNGDNRPPN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TESSTVTPTLPGETLTYVWKIPERSGAGTEDSACIPWAYYSTVDQVKDLYSGLIGPLIVCRRPRRKLEFALLFLVFDENE
Template Known Secondary structure 
SSS



B
TT

GGGS

SSS
S

TTTTTT





GGG
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   822.......830.........840.........850.........860.........870.........880.........890.........900.
 
   633......640.........650.........660.........670........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . CGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVV
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Template Sequence  SWYLDDNIKTYSDHPEKVNKDDEEFIESNKMHAINGRMFGNLQGLTMHVGDEVNWYLMGMG. NEIDLHTVHFHGHSFQYK
Template Known Secondary structure 
TT
S
GGG

TT
TTTB
TT




TT

S.STT

TT


S
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   909910.........920.........930.........940.........950.........960......... 970.........980.......
 
   679680.........690.........700.........710.........720.........730.........740.........750........
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Query Sequence  GLGRSPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHI
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Template Sequence  HR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GVYSSDVFDIFPGTYQTLEMFPRTPGIWLLHCHVTDHIHAGMETTYTV
Template Known Secondary structure  TT..............................S

S
TT



S

ST
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   988. 990.........1000.........1010.........1020.........1030.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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