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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank13Aligned Residues425
% Identity22%Templatec1of0A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:spore coat protein a; PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   227..230.........240.........250.........260..... ....270.........280.........
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Query Sequence  VLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHME. . . . . . . . . . . . . . GMEVTIHWHGIWQRGSQYYDGVPF. . .
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Template Sequence  LHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHEPEVKTVVHLHGGVT. . PDDSDGYPEAWF
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STTS

TTBSS

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   3940.........50.........60.........70.........80.........90.........100.... .....110......
 
   290.........300........ .310........ .320.........330.........340.........350.........360.
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Query Sequence  . . VTQCPIQQGNTFRYQWTGN. . AGTHFWHAHT. . . . GLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLH
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Template Sequence  SKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDV. . . PLLITDRTI
Template Known Secondary structure 
GGGSSB
TT


S


S
S

TTTTT

GGGGGG



GGG...
B
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   124.....130.........140.........150.........160.........170.........180.........190. ........200
 
   362.......370...... ...380.........390.........400.........410.........420.........430
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Query Sequence  EDAAERYPGRLAVNT. . . . . . . . . . . GQDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQ
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Template Sequence  NEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGK. . . . . . . . . . . . . . VWPYLEVEPR. KYRFRVINASNTRT. YN
Template Known Secondary structure 
TTS
B


SS
SS

TTS
SS


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STT..............S


SS.

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   201........210.........220.........230........ .240........ .250.........260.. ..
 
   431... .....440........ .450.........460.........470.........480........ .490.........500.......
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Query Sequence  VTIE. GHGMTVIATDGEPV. HPVDVNTIISFSGERYDFVISADQPVGAYWIQLRGLGECG. IRRAQQLAILRYARGPYQP
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Template Sequence  LSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPL.
Template Known Secondary structure  TT


TTS
TT

TT
TT



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TTTTT

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   265....270.........280.........290.........300.........310.........320.........330.........340...
 
   508.510.........520.........530.........540.........550.........560.........570.........580.......
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Query Sequence  ASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . AQKDESRKPKYLASYPSVQHERIQNIRTLKLAGTQDE. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .........................SS






SB
S

GGG




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   344.....350.........360.........370.........380
 
   588.590.........600.........610.........620.........630.........640.........650.........660.......
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Query Sequence  VVPSGDHLTSLVDEISYISPPAPPLSQIDDIPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHP
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Template Sequence  . . . . YGRPVLLLNNKRWHDPVTET. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PKVGTTEIWSIINPTR. . . GTHP
Template Known Secondary structure  ....TS
TTB
TTS


B
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BTT

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   381........390.........400 .........410...... ...420
 
   668.670.........680.........690.........700.........710.........720.........730. ........740......
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Query Sequence  FHLHGTAFYVVGLGRSPDKSIKKINLKHALELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFR. ADNPGYWLFHCHFLF
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Template Sequence  IHLHLVSFRVLDRRPFDIAR. . . . YQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSGRYVWHCHILE
Template Known Secondary structure  SS

B
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BSS

B


GGGSS
BS
TT

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   421........430.........440 .........450.........460.........470.........480.........490......
 
   747..750.........760
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Query Sequence  HIVIGMNLIFHIGT
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Template Sequence  HEDYDMMRPMDITD
Template Known Secondary structure  TTT
B
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   497..500.........510
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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