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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank33Aligned Residues211
% Identity29%Templatec1sddB_
PDB info PDB header:blood clottingChain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.........280.........290.........300....... .. 310.
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Query Sequence  IPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQWTG. NA. . . . . . . . . . GT
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Template Sequence  ILGPVIRAEVDDVIQVRFKNLAS. RPYSLHAHGL. . . . . . . . . . . . . . . SNAIQPNKTYTYVWHATTRSGPENPGSACRA
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   1602.......1610.........1620.... .....1630.... .....1640.........1650.........1660.....
 
   312..... ..320.........330.........340.........350.........360.........370.........380.........
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Query Sequence  HFWHAH. . TGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDPESMLINGKG
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Template Sequence  WAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDM. REFVLLFMVF. . . . . . . . . DEKKSWYYDNSHEFHAINGM.
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SSTTT

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   1687..1690.........1700.........1710.........1720..... ....1730..... ....1740.........1750.....
 
   390.........400.........410.........420.........430.........440.........450.........460.........
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Query Sequence  QFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTIISFSGERYDFVIS
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Template Sequence  . . . . . . . . . . IY. NLPGLRMYEQEWVRLHLLNLGGSRDI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..........SS.




TT



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   1771. .......1780.........1790........
 
   470.........480.........490.........500.........510.........520.........530.........540.........
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Query Sequence  ADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRADAVCVSNLKNAKK
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   550.........560.........570.........580.........590.........600.........610.........620.........
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Query Sequence  VDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDDIPPEYFCNGDNR
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   630.........640.........650.........660.........670.........680.........690.........700.........
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Query Sequence  PPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHALELDQMGMLERHF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HVVHFHGQTLLENGT. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   17991800.........1810...
 
   710.........720.........730.........740.........750........
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Query Sequence  SKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHI
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Template Sequence  . QQHQLGVWPLLPGSFKTLEMKASKPGWWLLDTEVGEIQRAGMQTPFLI
Template Known Secondary structure  .S
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   1814.....1820.........1830.........1840.........1850.........1860.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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