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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank31Aligned Residues265
% Identity24%Templatec2dv6F_
PDB info PDB header:oxidoreductaseChain: F: PDB Molecule:nitrite reductase; PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   225....230.........240.........250.........260.........270.........280.........290.........300....
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Query Sequence  QCVLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQ
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Template Sequence  KGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKD. SL. . . MVHSVDFHGATGPGGAAAFTQ. . TDPGEETVVT
Template Known Secondary structure  TTTTBBS


TT

TT.
S...S
B

TT

SGGGGGGG

..B
TT
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   174.....180.........190.........200.........210.... .. ...220.........230....... ..240.......
 
   305.. ..310....... ..320.........330.........340.........350.........360.........370..... ..
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Query Sequence  WTG. NAGTHFWHAH. . . TGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVN. . . TG
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Template Sequence  FKALIPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGLPQVD. . . . . . . REFYVMQGEIYTVKSFGTSGEQEMDYEKLIN
Template Known Secondary structure 

S


SSSTT

TT
S


S.......
BSS
TT



B
T
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   248.250.........260.........270.........280......... 290.........300.........310.........320
 
   378.380.........390.........400.........410.........420.........430.........440.........450.......
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Query Sequence  QDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVHPVDVNTII
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Template Sequence  EKPEYFLFNGSVG. . . . . . . . . SLTRSHPLYASVGETVRIFFGVGGPN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

STTSTT.........TBTTTS

TT
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   321........330... ......340.........350.........
 
   458.460.........470.........480.........490.........500.........510.........520.........530.......
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Query Sequence  SFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVILNPLDAICDRKRAD
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   538.540.........550.........560.........570.........580.........590.........600.........610.......
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Query Sequence  AVCVSNLKNAKKVDKGVLVERPDVKIFLPFRFFVYEPKALFIPNTYNRFLVVPSGDHLTSLVDEISYISPPAPPLSQIDD
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   618.620.........630.........640.........650.........660.........670.........680.........690.......
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Query Sequence  IPPEYFCNGDNRPPNCGPNCECTHMVDIPLGAIVEVVLVDEVQQVNLSHPFHLHGTAFYVVGLGRSPDKSIKKINLKHAL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FTSSFHVIGEIFDHVYSLGSVVS. . . . . . . . . . .
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T


GGG
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   360.........370.........380..
 
   698.700.........710.........720.........730.........740.........750.........760.........770...
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Query Sequence  ELDQMGMLERHFSKPPLKDTIAVPNNGYVVIRFRADNPGYWLFHCHFLFHIVIGMNLIFHIGTTADLPPVPPRFPT
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Template Sequence  . . . . . . . . . . . . PPLIGVQTVSVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK. NDSIMHEGPA
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S
TT


S
SSGGGGGGT


S
S.

SSS
SS

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   383......390.........400.........410.........420.........430..... ....440.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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