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Job DescriptionB7YZT1
Confidence100.00%DateTue Jan 22 11:31:19 GMT 2013
Rank34Aligned Residues269
% Identity17%Templatec1aq8B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:nitrite reductase; PDBTitle: structure of alcaligenes faecalis nitrite reductase reduced2 with ascorbate
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VLADGVERGILTANRMIPGPSIQVCENDKVVIDVENHME. GMEVTIHWHGIWQRGSQYYDGVPFVTQCPIQQGNTFRYQW
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Template Sequence  IDDAGTEVHAMAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAA. . . . . . . TGALGGGGLTEINPGEKTILRF
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STT

TT
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TT

TT

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B

TT
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SGGGGGGG

B
TT
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   52.......60.........70.........80.........90.........100.. .......110.........120....
 
   306. ..310....... ..320.........330.........340.........350.........360... ......
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Query Sequence  TG. NAGTHFWHAH. . . . TGLQKLDGLYGSVVVRQPPSRDPNSHLYDFDLTTHIMLISDWLHED. . . . . . . . . . . AAERYP
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Template Sequence  KATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTYDKIYYVGEQDFYVPRDENGKYKKYEAPGDAYE
Template Known Secondary structure 

S



TT
TTT

TB

TTS


S


B
TTS
B


SSGGGG
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   370.........380.........390.........400.........410.........420.........430.........440.........
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Query Sequence  GRLAVNTGQDPESMLINGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEGHGMTVIATDGEPVH
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Template Sequence  DTVKVMRTLTPTHVVFNGAVG. . . . . . . . . ALTGDKAMTAAVGEKVLIVHSQANRDTR. . . PHLIGGHGDYVWATGKFNT
Template Known Secondary structure  TTT

STTBTT.........TTSGGG
TT
SSS
B
...TS
TT
BTTS
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   205....210.........220..... ....230.........240.........250... ......260.........270..
 
   450 .........460.........470.........480.........490.........500.........510.......
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Query Sequence  P. . VDVNTIISFSGERYDFVISADQPVGAYWIQLRGLGECGIRRAQQLAILRYARGPYQPASSPPTYDVG
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Template Sequence  PPDVDQETWFIPGGAAGAAFYTFQQ. PGIYAYVNHNLIEA. . FELGAAAHFKVTGEWNDDLMTSVLAPSG
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SS

B
TT

S.
SS..TSS
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   273......280.........290....... ..300.........310. ........320.........330.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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