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Job DescriptionP08630
Confidence100.00%DateWed Feb 13 11:12:46 GMT 2013
Rank248Aligned Residues230
% Identity22%Templatec2jc6C_
PDB info PDB header:transferaseChain: C: PDB Molecule:calcium/calmodulin-dependent protein kinase type 1d; PDBTitle: crystal structure of human calmodulin-dependent protein2 kinase 1d
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   523......530.........540...... ...550.........560.........570.........580.........590.........600.
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Query Sequence  PMELMLMEELGSGQFGVVRRGKWR. GSIDTAVKMMKEGTMSEDDFIEEAKVMTKLQHPNLVQLYGVCSKHRPIYIVTEYM
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Template Sequence  KKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKAS. . . . IENEIAVLRKIKHENIVALEDIYESPNHLYLVMQLV
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   20.........30.........40.........50......... 60.........70.........80.........90.....
 
   602.......610.........620.........630.........640.........650.........660.........670.........680.
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Query Sequence  KHGSLLNYLRRHEKTLIGNMGLLLDMCIQVSKGMTYLERHNYIHRDLAARNCLVGSENVVKVADFGLARYVLDDQYTSSG
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Template Sequence  SGGELFDRIVEKG. . . FYTEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISPG. . . . . . . . . . . .
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   102.......110.... .....120.........130.........140.........150.........160......
 
   682.......690.........700.........710.........720.........730.........740. ........750........
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Query Sequence  GTKFPIKWAPPEVLNYTRFSSKSDVWAYGVLMWEIFTCGKMPYGRLKNTEVVERVQRGII. . . LEKPKSCAKEIYDVMKL
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Template Sequence  . . . . . . . YVAPEVLAQKPYSKAVDCWSIGVIAYILLC. GYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDSAKDFIRN
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   187..190.........200.........210...... ...220.........230.........240.........250........
 
   759760.........770.........
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Query Sequence  CWSHGPEERPAFRVLMDQLAL
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Template Sequence  LMEKDPNKRYTCEQAARHPWI
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   259260.........270.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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