 |
| Job Description | Q7KV33 | | Confidence | 26.41% | Date | Tue Jan 22 11:34:33 GMT 2013 |
| Rank | 220 | Aligned Residues | 52 |
| % Identity | 33% | Template | c1q78A_ |
| PDB info |
PDB header:transferase | Chain: A: PDB Molecule:poly(a) polymerase alpha; |
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride
|
| Resolution | 2.80 Å |
|
 |
|   |   |
1436 | . | . | . | 1440 | . | . | . | . | . | . | . | . | . | 1450 | . | . | . | . | . | . | . | . | . | 1460 | . | . | . | . | . | . | . | . | . | 1470 | . | . | . | . | . | . | . | . | . | 1480 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
| Query Sequence |   |
N | C | E | S | T | K | Q | D | Y | S | L | S | L | K | G | A | K | G | F | M | H | M | R | I | Q | R | N | E | T | G | Q | Y | I | L | G | Q | F | S | R | P | F | E | T | V | P | E | M | I | R | H | F | C | L | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
| Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
| Template Conservation |   |
  |   |   |
|   |
|
|
|
|   |   |
|
|
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
| . |   |
|   |   |
|   |   |   |
|
|   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
| Template Sequence |   |
N | I | L | G | F | L | G | G | V | S | W | A | M | L | V | A | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | C | Q | L | . |
Y | P | N | A | I | A | S | T | L | V | H | K | F | F | L | V | F | S | K | W | E | W | P | N | P | V | L | L | K | Q | P | E | E | C | N | L | N | L | P | V | W | D |
| Template Known Secondary structure |   |
T | T | T | T | S | B |
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  | T | . | S | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T | S |
| B |
| S | S |
|
|
|
|
| S | S |
|
|
|
|
|
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
239 | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | |
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . |
|   |
|   |   |
|
1490 | . | . | . | . | . | . | . | . | |
. | 1500 | . | . | . | . |
| Predicted Secondary structure |   |
. |
|
|
|
|
|
|
|  |  | . |  |  |  |  |  |  |
| Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| Query Sequence |   |
. |
R | L | P | V | R | G | A | E | H | . |
M | C | L | I | E | P |
| Query Conservation |   |
. |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |
| Alig confidence |   |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|
| Template Sequence |   |
P | R | V | N | P | S | D | R | Y | H | L | M | P | I | I | T | P |
| Template Known Secondary structure |   |
T | T | T |
| G | G | G | G | G |
| S | S |
| B | B |
| S |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
302 | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|