30/01/2013 19:05:41 : INFO  : Run start: Wed Jan 30 19:05:41 GMT 2013
30/01/2013 19:05:41 : INFO  : Initialised job
30/01/2013 19:05:41 : INFO  : Initialised job:
Sequence
>batch____
MFCRLCWIDFNAGEAMVECAGPCGSCFHRNCVDCVTGDVAHILATGGGYYSGLEWYCRTC
RQLYRLQVYFEIAICDDYSLPVDFVKKRPSSFDPCLAEAIPANPEHWIAPSPQTEFLPFG
EAQQALQLQPAAAAATAAATTSAAAAANATAAAPQLPPPLPVPVATLPNQAATAAAAATA
AILATHQQQQQQQHQHLSNNNNNGGSTHGQQHTHSNNNNTLPVGAQQQQQQQHQQQRATL
QHPPLPNSNIKQASVKLIEGYSDPKDTRNHKKVYHKKAKKRSTTGHKRHQQQQQQQQPHQ
QQLQQQQQQTLPTPRSAQQQQQLQQKLQQRHSTYNNNNGNSRKDKRNSQYNSDSSAPKSS
DDEADIDEEVEQQPLPVPQAPVQSASQPAAGLNSPDSISDDLVRPLPPQLQRSPRKLTVA
PAEHNKRQPSPYYYSDLLKSRDKDKDKDKDKDKDKDKDKDKDKDKDKERDKDREDFKLKC
RQSTASEPPQQTQTQLGGYRKSSSLDVPPAEEQPEAESHEEEDPRTGQDSQSTPKRYSFT
EEGVHIIRCETPSTSTSEESDCSECLKRREWHARALALVRKTCNVQPRNQNPTGSELQLQ
LQHCDAGEGELLKCCPPPPAPAENQSQVQPMPPHRLLGPAAVCGACITSAPASSLAGGRG
SELGDDLEEEYFRPRSIFYVHPHGVHECIECAQPAQPATVPAPTLSNPSLDIYGDDEDEV
DGDEDEDEEDDSEDIMGSRRRQIYETAFDCKIAKSDDDLDEVDRITNCSVLLQLSNGNGG
DISKVTGSSKTRAECKRAKNSKNQALQEQTGEAHVQVHHVEAELGKLQLSQVDQQNQNQN
QSQNQQHGVSATGSGASASSTQQLPVRGYTPSPPSTAPLPMKFPGKHDRYLNMNSIRSAP
NLPAANPAHPRLRDLRLPIQSMRHQCGGSSNDNSLTDSAYVNPPSTNSNSNAASASASAS
VSATGSAAPRRPRSFVLESGRVLELRRSAQGHQGGQSTHHHHHHHHHAPGSRRNRHGQSQ
GQTTGGGHNYSSTESIATSSSGGSMESLRSSTSEGNRSTSSSESRHSSSLSSHSSESGSG
GSGGSGGSSVAYPLRPAPLLLHSKLHILSPISDKSSQEPASASASEQSQQPSQQLAPMAS
QEDDSTTSGAPAGNQVQVNASLKQPRSNRGAPNKALLQLADELLGSDSGISLHSREDGKP
QALALQRLTLPKLQLIGAEGTTTSATASGAGGSSATGGSSGAGGSGSGSVVASGSTGIQQ
DLRDLPFDMPKLRRRKTLQQEAACTSGSATSVDLGELPFDMPKLRRRLRANQAEINNLLM
HSTESSGISQASSSHSMRDDQKMSSKLDTALFRQNLTLNLNESRQATKQFGSLDLRGLNS
NKELNMNLSQGYVTAVDLIDVTIPLERQGWYHGAITRIEAETTLRPLSEGSFLVRNCEST
KQDYSLSLKGAKGFMHMRIQRNETGQYILGQFSRPFETVPEMIRHFCLNRLPVRGAEHMC
LIEPVIAQLL

30/01/2013 19:05:41 : INFO  : Checked sequence
30/01/2013 19:05:41 : INFO  : Finding homologues with PSI-BLAST
30/01/2013 19:05:41 : INFO  : PSI-BLAST 3 iterations
30/01/2013 19:18:18 : INFO  : PSI-BLAST 5 iterations
30/01/2013 19:25:10 : INFO  : Finished PSI-BLAST
30/01/2013 19:25:10 : INFO  : Running Buildali to generate a3m file
30/01/2013 21:29:51 : INFO  : Converting to HMM
30/01/2013 21:30:03 : INFO  : Calibrating HMM
30/01/2013 21:30:32 : INFO  : Searching HMM database
30/01/2013 21:58:12 : INFO  : Finished buildali
30/01/2013 21:58:12 : INFO  : Predicting secondary structure
30/01/2013 21:58:13 : INFO  : Predicted secondary structure (PSI-Pred)
30/01/2013 21:58:13 : INFO  : Predicting Disordered regions
30/01/2013 21:58:13 : INFO  : Predicted Disorder (Disopred)
30/01/2013 21:58:13 : INFO  : Running memsat_svm check
30/01/2013 22:03:38 : INFO  : Globular protein
30/01/2013 22:03:38 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd95adb05d880fe9d'
30/01/2013 22:03:38 : INFO  : Initialising fold library search
30/01/2013 22:03:38 : INFO  : Initialised search input
30/01/2013 22:03:38 : INFO  : Building Ensemble models
30/01/2013 22:03:38 : INFO  : Building hh.c2eo6A_.model.1.pdb
30/01/2013 22:03:38 : INFO  : Building hh.c2hdxB_.model.2.pdb
30/01/2013 22:03:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c2hdxB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c2hdxB_.2.pdb
30/01/2013 22:03:39 : INFO  : Building hh.c2eo3A_.model.3.pdb
30/01/2013 22:03:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c2eo3A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c2eo3A_.3.pdb
30/01/2013 22:03:39 : INFO  : Building hh.c3hizB_.model.4.pdb
30/01/2013 22:03:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c3hizB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c3hizB_.4.pdb
30/01/2013 22:03:40 : INFO  : Building hh.d1mila_.model.5.pdb
30/01/2013 22:03:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.d1mila_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/d1mila_.5.pdb
30/01/2013 22:03:41 : INFO  : Building hh.d2shpa2.model.6.pdb
30/01/2013 22:03:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.d2shpa2.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/d2shpa2.6.pdb
30/01/2013 22:03:41 : INFO  : Building hh.c2vpdA_.model.7.pdb
30/01/2013 22:03:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c2vpdA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c2vpdA_.113.pdb
30/01/2013 22:03:41 : INFO  : Building hh.c3lqiA_.model.8.pdb
30/01/2013 22:03:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c3lqiA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c3lqiA_.114.pdb
30/01/2013 22:03:42 : INFO  : Building hh.c2kyuA_.model.9.pdb
30/01/2013 22:03:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c2kyuA_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c2kyuA_.115.pdb
30/01/2013 22:03:42 : INFO  : Building hh.c2xb1A_.model.10.pdb
30/01/2013 22:03:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.c2xb1A_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/c2xb1A_.116.pdb
30/01/2013 22:03:43 : INFO  : Building hh.d1zvfa1.model.11.pdb
30/01/2013 22:03:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/hh.d1zvfa1.model.11.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d95adb05d880fe9d/d1zvfa1.160.pdb
30/01/2013 22:03:43 : INFO  : Building c2eo6A_.1.pdb
30/01/2013 22:03:44 : INFO  : Building c2hdxB_.2.pdb
30/01/2013 22:03:44 : INFO  : Building c2eo3A_.3.pdb
30/01/2013 22:03:44 : INFO  : Building c3hizB_.4.pdb
30/01/2013 22:03:45 : INFO  : Building d1mila_.5.pdb
30/01/2013 22:03:45 : INFO  : Building d2shpa2.6.pdb
30/01/2013 22:03:46 : INFO  : Building d1fhsa_.7.pdb
30/01/2013 22:03:46 : INFO  : Building c2gsbA_.8.pdb
30/01/2013 22:03:47 : INFO  : Building c2hmhA_.9.pdb
30/01/2013 22:03:47 : INFO  : Building c2eobA_.10.pdb
30/01/2013 22:03:47 : INFO  : Building c3gqiB_.11.pdb
30/01/2013 22:03:48 : INFO  : Building c2kk6A_.12.pdb
30/01/2013 22:03:48 : INFO  : Building d1pica_.13.pdb
30/01/2013 22:03:49 : INFO  : Building d1qada_.14.pdb
30/01/2013 22:03:49 : INFO  : Building c2vifA_.15.pdb
30/01/2013 22:03:50 : INFO  : Building c2crhA_.16.pdb
30/01/2013 22:03:50 : INFO  : Building d3c7ia1.17.pdb
30/01/2013 22:03:50 : INFO  : Building d1a81e2.18.pdb
30/01/2013 22:03:51 : INFO  : Building c2dlzA_.19.pdb
30/01/2013 22:03:52 : INFO  : Building c2lqnA_.20.pdb
30/01/2013 22:03:58 : INFO  : Finished HH model building
30/01/2013 22:03:58 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
30/01/2013 22:04:03 : INFO  : html domain output complete ID 'd95adb05d880fe9d'
30/01/2013 22:42:57 : INFO  : Run end  : Wed Jan 30 22:42:57 GMT 2013
