Phyre 2 alignment of Q7KV33 with c2l5uA_

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Job Description | Q7KV33
Confidence | 76.67% | Date | Tue Jan 22 11:34:33 GMT 2013
Rank | 133 | Aligned Residues | 44
% Identity | 30% | Template | c2l5uA_
PDB info | PDB header:metal binding protein | Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 4; | PDBTitle: structure of the first phd finger (phd1) from chd4 (mi2b)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | C | R | L | C | W | I | D | F | N | A | G | E | A | M | V | E | C | A | G | P | C | G | S | C | F | H | R | N | C | V | D | C | V | T | G | D | V | A | H | I | L | A | T | G | G | G | Y | Y | S | G | L | E | W | Y | C | R | T | C | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
Template Sequence |  | Y | C | E | V | C | . | . | . | . | Q | Q | G | G | E | I | I | L | C | D | T | . | C | P | R | A | Y | H | M | V | C | L | D | . | . | . | . | . | . | . | P | D | M | E | K | A | P | E | G | . | . | . | . | K | W | S | C | P | H | C | E
Template Known Secondary structure |  | S |  | T | T | T | . | . | . | . | S |  |  | S | S |  |  |  |  | S | S | . | S | S |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | T | T |  |  | S |  |  |  | S | . | . | . | . | S |  |  |  | T | T | G | G
Template Predicted Secondary structure |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 13 | . | . | . | . |  |  |  |  | . | . | 20 | . | . | . | . | . | . | . | . |  | . | 30 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | 40 | . | . | . | . | . | . | . | . |  |  |  |  | . | 50 | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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