Job Description Q9XYM0 Confidence 31.36% Date Wed Feb 13 11:39:18 GMT 2013 Rank 376 Aligned Residues 119 % Identity 19% Template c3ts3D_ PDB info PDB header:viral protein Chain: D: PDB Molecule:capsid polyprotein; PDBTitle: crystal structure of the projection domain of the turkey astrovirus2 capsid protein at 1.5 angstrom resolution Resolution 1.49 Å

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		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																								.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		L	K	R	P	A	C	R	R	V	E	K	V	I	G	K	F	D	F	V	G	S	D	Q	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	F	.	Q	R	G	E	V	L	T	I	V	R	K	D	E	D	Q	W	W	T	A	R	N	S	S	G	K	I	G	Q
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation
Template Sequence		L	P	L	P	Q	A	D	D	Q	Y	T	P	Y	F	V	Y	N	F	Q	G	E	R	V	S	T	T	E	T	G	V	F	C	L	A	A	I	P	A	A	T	T	S	S	R	Y	N	N	Q	I	T	I	P	S	I	G	Y	R	G	T	L	F	L	L	D	A	A	S	W	W	N	I	L	D	V	T	Q	T	G	V	L
Template Known Secondary structure			S	G	G	G							S	S	S	S	B		T	T	S		B			S		S	T	T	S								B			T	T	S							S	S																								T	T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.						.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																															.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.
Query Sequence		I	P	V	P	Y	I	Q	Q	Y	D	D	Y	M	D	E	D	A	I	D	K	N	E	P	S	I	S	G	S	S	N	V	F	E	S	T	L	K	R	T	D	L	N	R	K	L	P	A	Y	A	R	V	K	Q	S	R	V	P	N	A	Y	D	.	.	.	.	.	K	T	A	L	K	L	E	I	G	D	I	I	K	V
Query Conservation																																																															.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Q	P	R	L	G	V	G	V	M	Q	T	M	K	T	L	K	Q	H	I	K	D	Y	T	E	P	A	I	Q	K	Y	Y	P	G	T	T	N	L	D	E	Q	L	K	Q	R	L	N	L	A	E	G	D	P	V	I	S
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			G	G	G												T	T	T	T	T		T	T	S	T	T				B		G	G	G												T			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		511																								.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		T	K	T	N	I	N	G	Q	W	E	G	E	L	N	G	K	N	G	.	H	F
Query Conservation																				.
Alig confidence			.	.	.	.	.	.	.	.	.									.
Template Conservation			.	.	.	.	.	.	.	.	.
Template Sequence		M	.	.	.	.	.	.	.	.	.	G	D	T	N	G	R	R	A	A	L	F
Template Known Secondary structure			.	.	.	.	.	.	.	.	.			T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Template SS confidence
		568										.	570	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions