20/02/2013 03:15:19 : INFO  : Run start: Wed Feb 20 03:15:19 GMT 2013
20/02/2013 03:15:19 : INFO  : Initialised job
20/02/2013 03:15:19 : INFO  : Initialised job:
Sequence
>batch____
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLCVREDTKVSNY
IINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPLKRPACRRVEKVIGKFDFVGS
DQDDLPFQRGEVLTIVRKDEDQWWTARNSSGKIGQIPVPYIQQYDDYMDEDAIDKNEPSI
SGSSNVFESTLKRTDLNRKLPAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWE
GELNGKNGHFPFTHVEFVDDCDLSKNSTEIC

20/02/2013 03:15:19 : INFO  : Checked sequence
20/02/2013 03:15:19 : INFO  : Finding homologues with PSI-BLAST
20/02/2013 03:15:19 : INFO  : PSI-BLAST 3 iterations
20/02/2013 03:16:59 : INFO  : PSI-BLAST 5 iterations
20/02/2013 03:18:58 : INFO  : Finished PSI-BLAST
20/02/2013 03:18:58 : INFO  : Running Buildali to generate a3m file
20/02/2013 03:29:31 : INFO  : Converting to HMM
20/02/2013 03:29:33 : INFO  : Calibrating HMM
20/02/2013 03:29:40 : INFO  : Searching HMM database
20/02/2013 03:35:52 : INFO  : Finished buildali
20/02/2013 03:35:52 : INFO  : Predicting secondary structure
20/02/2013 03:35:53 : INFO  : Predicted secondary structure (PSI-Pred)
20/02/2013 03:35:53 : INFO  : Predicting Disordered regions
20/02/2013 03:35:54 : INFO  : Predicted Disorder (Disopred)
20/02/2013 03:35:54 : INFO  : Running memsat_svm check
20/02/2013 03:37:31 : INFO  : Running memsat_svm full
20/02/2013 03:42:08 : INFO  : Predicted Transmembrane (memsat_svm) ID 'd6019a9b53fcac1f'
20/02/2013 03:42:08 : INFO  : Initialising fold library search
20/02/2013 03:42:08 : INFO  : Initialised search input
20/02/2013 03:42:08 : INFO  : Building Ensemble models
20/02/2013 03:42:09 : INFO  : Building hh.c2lqnA_.model.1.pdb
20/02/2013 03:42:10 : INFO  : Building hh.c2eyzA_.model.2.pdb
20/02/2013 03:42:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/d6019a9b53fcac1f/hh.c2eyzA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/d6019a9b53fcac1f/c2eyzA_.2.pdb
20/02/2013 03:42:12 : INFO  : Building c2lqnA_.1.pdb
20/02/2013 03:42:13 : INFO  : Building c2eyzA_.2.pdb
20/02/2013 03:42:14 : INFO  : Building c3qwyA_.3.pdb
20/02/2013 03:42:15 : INFO  : Building c3qwxX_.4.pdb
20/02/2013 03:42:16 : INFO  : Building c2dvjA_.5.pdb
20/02/2013 03:42:17 : INFO  : Building c2eyyA_.6.pdb
20/02/2013 03:42:18 : INFO  : Building c2l3sA_.7.pdb
20/02/2013 03:42:19 : INFO  : Building c1griA_.8.pdb
20/02/2013 03:42:19 : INFO  : Building c1ng2A_.9.pdb
20/02/2013 03:42:20 : INFO  : Building c1ov3A_.10.pdb
20/02/2013 03:42:21 : INFO  : Building c2eo3A_.11.pdb
20/02/2013 03:42:22 : INFO  : Building d2oq1a1.12.pdb
20/02/2013 03:42:22 : INFO  : Building d2eyva1.13.pdb
20/02/2013 03:42:23 : INFO  : Building c2oq1A_.14.pdb
20/02/2013 03:42:23 : INFO  : Building c2gsbA_.15.pdb
20/02/2013 03:42:23 : INFO  : Building c2eo6A_.16.pdb
20/02/2013 03:42:24 : INFO  : Building c3hizB_.17.pdb
20/02/2013 03:42:24 : INFO  : Building c2y3aB_.18.pdb
20/02/2013 03:42:25 : INFO  : Building d1a81a1.19.pdb
20/02/2013 03:42:26 : INFO  : Building c2b3oA_.20.pdb
20/02/2013 03:42:29 : INFO  : Finished HH model building
20/02/2013 03:42:29 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
20/02/2013 03:42:34 : INFO  : html domain output complete ID 'd6019a9b53fcac1f'
20/02/2013 04:03:04 : INFO  : Run end  : Wed Feb 20 04:03:04 GMT 2013
