Phyre 2 alignment of Q9XYM0 with c3o27B_

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Job Description | Q9XYM0
Confidence | 27.31% | Date | Wed Feb 13 11:39:18 GMT 2013
Rank | 381 | Aligned Residues | 47
% Identity | 19% | Template | c3o27B_
PDB info | PDB header:dna binding protein | Chain: B: PDB Molecule:putative uncharacterized protein; | PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx
Resolution | 2.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | R | N | S | W | Y | F | G | P | M | S | R | Q | D | A | T | E | V | L | M | N | E | R | E | R | G | V | F | L | V | R | D | S | N | S | I | A | G | D | Y | V | L | C | V | R | E | D | T | K | V | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | R | A | T | F | Y | L | . | L | I | P | K | D | I | A | E | A | L | . | . | D | I | K | P | D | D | T | F | I | L | N | M | E | . | Q | K | D | G | D | I | V | L | S | Y | K | R | V | K | E | L | K
Template Known Secondary structure |  |  | B |  |  |  | B |  | . |  |  |  |  |  |  |  |  |  | T | . | . | T |  |  | T | T |  |  |  |  |  |  |  |  | . |  |  | T | T |  |  |  |  |  |  |  |  |  | S | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 13 | . | . | . | . | . | . |  | 20 | . | . | . | . | . | . | . | . | . |  |  | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . |  | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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