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Job DescriptionQ8INJ8
Confidence100.00%DateWed Feb 13 11:35:57 GMT 2013
Rank22Aligned Residues243
% Identity24%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   797..800.........810.........820.........830. ........840.........850.........860.........870..
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Query Sequence  EAELQLRESIGKGEFGDVMLGILRNEKVAVKMLKD. . . . EGAVQKFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLVTEY
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDL
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TTTTS
S


BTTB


SS

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   10.........20.........30.........40.........50.........60.........70.........80.........
 
   873......880.........890.........900.........910.........920.........930. ........940.. ....
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Query Sequence  MSKGSLVDYLRSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVHRDLAARNVLISEDCV. . . AKVSDFGLARE. . . ECYN
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Template Sequence  VTGGELFEDIVAREY. . YSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA
Template Known Secondary structure 
B

B
S
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B



SSTTSBSSTT




SS
B


TT

B
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   92.......100...... ...110.........120.........130.........140.........150.........160.........
 
   947..950.........960.........970.........980.........990.........1000........ .1010.........1020...
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Query Sequence  LDVGKLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSFGRVPYPRIPLADVVKHVEVGYK. . . MEAPEGCPPEIYEMM
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Template Sequence  WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLI
Template Known Secondary structure 


S
S
GGG

TT

B
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S


SST




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   170.........180.........190.........200........ .210.........220.........230.........240........
 
   1024.....1030.........1040..
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Query Sequence  RQAWDLNPAKRPTFAELKV
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Template Sequence  NKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   249250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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