Job Description P29349 Confidence 28.90% Date Tue Jan 22 11:46:53 GMT 2013 Rank 264 Aligned Residues 59 % Identity 14% Template c4h61A_ PDB info PDB header:transcription Chain: A: PDB Molecule:mediator of rna polymerase ii transcription subunit 6; PDBTitle: structure of the schizosaccharomyces pombe mediator subunit med6 Resolution 2.70 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.									.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.											.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.											.	.
Query Sequence		H	P	T	I	S	G	I	E	A	E	K	L	L	Q	E	Q	G	F	D	G	S	F	L	A	R	L	S	S	S	N	P	G	A	F	T	L	S	V	R	R	G	N	E	V	T	H	I	K	I	Q	N	N	G	D	.	.	.	.	.	.	.	.	F	F	D	L	Y	G	G	E	K	F	.	.	A	T	L	P	E	L
Query Conservation																																																								.	.	.	.	.	.	.	.											.	.
Alig confidence																		.	.				.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.											.	.
Template Conservation																		.	.				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	A	L	D	L	G	D	L	N	S	Q	L	K	R	L	.	.	T	G	I	.	.	.	.	.	.	.	.	.	.	.	Q	F	V	I	I	H	E	R	P	P	F	L	W	V	I	Q	K	Q	N	R	L	N	E	N	E	V	K	P	L	T	V	Y	F	V	C	N	E	N	I	Y	M	A	P	N	A	Y	T	L
Template Known Secondary structure			T	T												T		.	.				.	.	.	.	.	.	.	.	.	.	.									T	T	T											S	S	S												T	T
Template Predicted Secondary structure																		.	.				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.												.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		78	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		125	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions