Job Description P29349 Confidence 99.75% Date Tue Jan 22 11:46:53 GMT 2013 Rank 140 Aligned Residues 82 % Identity 23% Template c3gxxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription elongation factor spt6; PDBTitle: structure of the sh2 domain of the candida glabrata2 transcription elongation factor spt6, crystal form b Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																															.											.	.	.
Query SS confidence																																															.											.	.	.
Query Sequence		T	E	R	W	F	H	G	N	L	S	G	K	E	A	E	K	L	I	L	E	R	G	K	N	G	S	F	L	V	R	E	S	Q	S	K	P	G	D	F	V	L	S	V	R	T	.	D	D	K	V	T	H	V	M	I	R	.	.	.	W	Q	D	K	K	Y	D	V	G	G	G	E	S	F	G	T	L	S	E	L	I
Query Conservation																																															.											.	.	.
Alig confidence								.																.																							.											.	.	.
Template Conservation								.																.
Template Sequence		N	H	P	Y	Y	F	.	P	F	N	G	K	Q	A	E	D	Y	L	R	S	K	E	.	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L	F	Q	H	V	D	I	Q	E	X	E	K	E	X	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I
Template Known Secondary structure		T		T	T	B		.												T	T	S		.	T	T									S	T	T											T	T																				S	S	S				S	S
Template Predicted Secondary structure								.																.
Template SS confidence
		9	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		184	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	Y	K	R	N	P	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	Y	L	Q	N	K	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions